Cagra.1138s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1138s0003 T286016_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.906 0.989
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.716 0.742
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.716 0.742
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.688 0.699
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.688 0.699
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.680 0.656
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.680 0.656
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.669 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1138s0003.1.p Myb 26 73
Cagra.1138s0003.1.p Myb 79 124

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

420 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I
30167.m000856 Ricinus communis 30167.m000856 I
30174.m008721 Ricinus communis 30174.m008721 I
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I
TCP1 Arabidopsis thaliana AT1G67260 D
BRC2 Arabidopsis thaliana AT1G68800 I
Bo2g055640 Brassica oleracea Bo2g055640 I
Bo6g099040 Brassica oleracea Bo6g099040 I
Bo6g103670 Brassica oleracea Bo6g103670 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I
Bra004097 Brassica rapa Bra004097 I
Bra004212 Brassica rapa Bra004212 I
Bra038350 Brassica rapa Bra038350 I
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
Carubv10020555m.g Capsella rubella Carubv10020555m.g I
cassava10552.m1 Manihot esculenta cassava10552.m1 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I
Cla002355 Citrullus lanatus Cla002355 I
Cla007227 Citrullus lanatus Cla007227 I
Cla016709 Citrullus lanatus Cla016709 I
Cucsa.031600 Cucumis sativus Cucsa.031600 I
Cucsa.238090 Cucumis sativus Cucsa.238090 I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Cucsa.283930 Cucumis sativus Cucsa.283930 I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
GLYMA08G28691 Glycine max GLYMA08G28691 I
GLYMA10G39141 Glycine max GLYMA10G39141 I
GLYMA13G07475 Glycine max GLYMA13G07475 I
GLYMA18G51581 Glycine max GLYMA18G51581 I
GLYMA19G05921 Glycine max GLYMA19G05921 I
GLYMA20G28670 Glycine max GLYMA20G28670 I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10035055.g Linum usitatissimum Lus10035055.g I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
mgf019480m Mimulus guttatus mgf019480m I
mgf022233m Mimulus guttatus mgf022233m I
mgf024687m Mimulus guttatus mgf024687m I
mgf026636m Mimulus guttatus mgf026636m I
MLOC_70116 Hordeum vulgare MLOC_70116 I
MTR_1g103380 Medicago truncatula MTR_1g103380 I
MTR_6g017055 Medicago truncatula MTR_6g017055 I
MTR_7g018500 Medicago truncatula MTR_7g018500 I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I
PK12240.1 Cannabis sativa PK12240.1 D
PK19717.1 Cannabis sativa PK19717.1 D
Pm015499 Prunus mume Pm015499 I
Pm029002 Prunus mume Pm029002 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I
TCM_011874 Theobroma cacao TCM_011874 I
TCM_019518 Theobroma cacao TCM_019518 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
BRC2 Vitis vinifera VIT_01s0011g02920 I
TCP1 Vitis vinifera VIT_14s0083g00150 I