GRMZM2G342588 (Zea mays)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 GRMZM2G342588 T345423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.840
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.840
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.840
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.840
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.813
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.773
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.693
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.667
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.653
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.653
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.653
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.627
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.627
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.627
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.627
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.627
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.627
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.627
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.627
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.613
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.613
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.600
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.600
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.600
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.600
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.587
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.560
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.520
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G342588_P01 TCR/CxC 72 108
GRMZM2G342588_P01 TCR/CxC 156 193

Links

Other TCR/CxC family TFs
Other Zea mays TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I
30190.m011119 Ricinus communis 30190.m011119 I
60638.m00016 Ricinus communis 60638.m00016 I
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I
DREB1F Arabidopsis thaliana AT1G12610 D
DREB1C Arabidopsis thaliana AT4G25470 D
DREB1A Arabidopsis thaliana AT4G25480 D
DREB1D Arabidopsis thaliana AT5G51990 D
Bo01335s010 Brassica oleracea Bo01335s010 I
Bo7g110320 Brassica oleracea Bo7g110320 I
Bo8g108050 Brassica oleracea Bo8g108050 I
Bo9g104770 Brassica oleracea Bo9g104770 I
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I
Bra016763 Brassica rapa Bra016763 I
Bra019162 Brassica rapa Bra019162 I
Bra022770 Brassica rapa Bra022770 I
Bra026963 Brassica rapa Bra026963 I
Bra028290 Brassica rapa Bra028290 I
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I
Carubv10005709m.g Capsella rubella Carubv10005709m.g I
Carubv10010303m.g Capsella rubella Carubv10010303m.g I
Carubv10027759m.g Capsella rubella Carubv10027759m.g I
cassava17064.m1 Manihot esculenta cassava17064.m1 I
cassava35062.m1 Manihot esculenta cassava35062.m1 I
cassava41192.m1 Manihot esculenta cassava41192.m1 I
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I
Cla002362 Citrullus lanatus Cla002362 I
Cla006315 Citrullus lanatus Cla006315 I
Cla011674 Citrullus lanatus Cla011674 I
Cucsa.251030 Cucumis sativus Cucsa.251030 I
Cucsa.302750 Cucumis sativus Cucsa.302750 I
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I
GLYMA09G27180 Glycine max GLYMA09G27180 I
GLYMA12G30740 Glycine max GLYMA12G30740 I
GLYMA13G39540 Glycine max GLYMA13G39540 I
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I
Lus10001871.g Linum usitatissimum Lus10001871.g I
Lus10006332.g Linum usitatissimum Lus10006332.g I
Lus10006334.g Linum usitatissimum Lus10006334.g I
Lus10029601.g Linum usitatissimum Lus10029601.g I
Lus10029602.g Linum usitatissimum Lus10029602.g I
MDP0000154764 Malus domestica MDP0000154764 I
MDP0000198054 Malus domestica MDP0000198054 I
mgf017136m Mimulus guttatus mgf017136m I
mgf026642m Mimulus guttatus mgf026642m I
MTR_2g085015 Medicago truncatula MTR_2g085015 I
MTR_6g466130 Medicago truncatula MTR_6g466130 I
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I
PK23332.1 Cannabis sativa PK23332.1 I
Pm023769 Prunus mume Pm023769 I
Pm023775 Prunus mume Pm023775 I
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I
CBF4 Arabidopsis lyrata scaffold_801637.1 I
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I
TCM_016175 Theobroma cacao TCM_016175 I
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I