cassava6237.valid.m1 (Manihot esculenta)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 cassava6237.valid.m1 T202108_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6237.valid.m1 GRAS 249 611

Links

Other GRAS family TFs
Other Manihot esculenta TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.736
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.833
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.847
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.903
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.903
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.883
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.861
Ca_13295 Cicer arietinum Ca_13295 I 0.800
Pm014329 Prunus mume Pm014329 I 0.883
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.700
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.705
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.870
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.867
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.794
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.844
MDP0000669451 Malus domestica MDP0000669451 I 0.897
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.712
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.714
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.785
GAI Arabidopsis thaliana AT1G14920 N 0.744
RGL1 Arabidopsis thaliana AT1G66350 N 0.714
RGA Arabidopsis thaliana AT2G01570 N 0.757
SLR1 Oryza indica BGIOSGA013420 N 0.704
Bo2g052880 Brassica oleracea Bo2g052880 N 0.708
Bo7g078550 Brassica oleracea Bo7g078550 N 0.756
Bra024875 Brassica rapa Bra024875 N 0.760
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.706
F775_03572 Aegilops tauschii F775_03572 N 0.750
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.750
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.730
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.753
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.744
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.742
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.700
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.708
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.714
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.706
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.805
OB03G38380 Oryza brachyantha OB03G38380 N 0.703
OBART03G31370 Oryza barthii OBART03G31370 N 0.704
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.704
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.704
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.704
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.704
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.704
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.704
SLR1 Oryza sativa OS03G0707600 N 0.708
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.822
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.807
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.797
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.779
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.706
Si039400m.g Setaria italica Si039400m.g N 0.714
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.822
TCM_010965 Theobroma cacao TCM_010965 N 0.806
TCM_019165 Theobroma cacao TCM_019165 N 0.868
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.714
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.706
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.703
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.803
Ca_05046 Cicer arietinum Ca_05046 N 0.756
Cla003996 Citrullus lanatus Cla003996 N 0.782
Cla020062 Citrullus lanatus Cla020062 N 0.806
Pm006304 Prunus mume Pm006304 N 0.784
28677.m000055 Ricinus communis 28677.m000055 N 0.933
29692.m000540 Ricinus communis 29692.m000540 N 0.808
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.794
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.797
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.789
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.772
mgf008289m Mimulus guttatus mgf008289m N 0.769
mgf025772m Mimulus guttatus mgf025772m N 0.722
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.731
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.772
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.706
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.750
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.764
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.717
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.768
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.747
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.751
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.728
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.732
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.872
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.749
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.758
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.794
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.878
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.883
MDP0000237978 Malus domestica MDP0000237978 N 0.750
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.869
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.750
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.717
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.717
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.798
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.853
SapurV1A.0230s0190 Salix purpurea SapurV1A.0230s0190 N 0.724
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.796
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.771
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.753
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.714
PK14700.1 Cannabis sativa PK14700.1 N 0.804
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.816
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.816