Bo3g002560 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo3g002560 T204885_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.830 0.946
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.830 0.946
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.830 0.946
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.779 0.732
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.589
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.602 0.643
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g002560.1 Homeodomain 76 131

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.779
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.691
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.830
estExt_gwp_gw1.C_70211 Physcomitrella patens estExt_gwp_gw1.C_70211 D 0.602
PK20392.1 Cannabis sativa PK20392.1 D 0.711
AC233899.1_FG004 Zea mays AC233899.1_FG004 I 0.599
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.738
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.717
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I 0.612
ATHB-23 Arabidopsis thaliana AT1G26960 I 0.611
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.632
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
Bo12274s010 Brassica oleracea Bo12274s010 I 0.687
Bo1g158730 Brassica oleracea Bo1g158730 I 0.691
Bo2g005230 Brassica oleracea Bo2g005230 I 0.850
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
Bo3g153930 Brassica oleracea Bo3g153930 I 0.603
Bo4g034490 Brassica oleracea Bo4g034490 I 0.776
Bo4g100070 Brassica oleracea Bo4g100070 I 0.646
Bo5g041500 Brassica oleracea Bo5g041500 I 0.601
Bo8g076330 Brassica oleracea Bo8g076330 I 0.611
Bo9g165360 Brassica oleracea Bo9g165360 I 0.711
Bo9g181710 Brassica oleracea Bo9g181710 I 0.619
Bo9g181720 Brassica oleracea Bo9g181720 I 0.830
Bra005259 Brassica rapa Bra005259 I 0.776
Bra006285 Brassica rapa Bra006285 I 0.711
Bra008717 Brassica rapa Bra008717 I 0.711
Bra009510 Brassica rapa Bra009510 I 0.830
Bra014417 Brassica rapa Bra014417 I 0.631
Bra016300 Brassica rapa Bra016300 I 0.611
Bra018155 Brassica rapa Bra018155 I 0.611
Bra022687 Brassica rapa Bra022687 I 0.652
Bra023506 Brassica rapa Bra023506 I 0.711
Bra024665 Brassica rapa Bra024665 I 0.601
Bra028820 Brassica rapa Bra028820 I 0.850
Bra039135 Brassica rapa Bra039135 I 0.691
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.704
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.830
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I 0.611
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.640
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.711
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.765
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.678
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.765
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.711
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.711
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.662
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.673
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.673
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
GSMUA_Achr10G24810_001 Musa acuminata GSMUA_Achr10G24810_001 I 0.602
GSMUA_Achr10G30330_001 Musa acuminata GSMUA_Achr10G30330_001 I 0.602
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
GSMUA_Achr6G10310_001 Musa acuminata GSMUA_Achr6G10310_001 I 0.602
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.705
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.711
GSMUA_Achr7G12740_001 Musa acuminata GSMUA_Achr7G12740_001 I 0.600
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.619
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.702
MTR_5g019650 Medicago truncatula MTR_5g019650 I 0.599
MTR_5g019680 Medicago truncatula MTR_5g019680 I 0.599
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.711
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.666
MTR_8g089895 Medicago truncatula MTR_8g089895 I 0.602
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.817
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.612
PGSC0003DMG400016148 Solanum tuberosum PGSC0003DMG400016148 I 0.602
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.616
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.616
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.616
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.619
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.668
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.787
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.711
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.666
PRUPE_ppa011343mg Prunus persica PRUPE_ppa011343mg I 0.599
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.783
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.711
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.673
Sb07g029150 Sorghum bicolor Sb07g029150 I 0.602
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.691
SELMODRAFT_108871 Selaginella moellendorffii SELMODRAFT_108871 I 0.602
SELMODRAFT_129907 Selaginella moellendorffii SELMODRAFT_129907 I 0.600
SELMODRAFT_18196 Selaginella moellendorffii SELMODRAFT_18196 I 0.602
SELMODRAFT_19476 Selaginella moellendorffii SELMODRAFT_19476 I 0.602
SELMODRAFT_81609 Selaginella moellendorffii SELMODRAFT_81609 I 0.600
SELMODRAFT_97273 Selaginella moellendorffii SELMODRAFT_97273 I 0.602
Si030983m.g Setaria italica Si030983m.g I 0.673
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.668
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.616
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.605
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.609
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.619
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.618
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.817
Solyc11g010270.1 Solanum lycopersicum Solyc11g010270.1 I 0.602
TCM_018470 Theobroma cacao TCM_018470 I 0.711
TCM_022391 Theobroma cacao TCM_022391 I 0.783
TCM_031644 Theobroma cacao TCM_031644 I 0.626
VIT_07s0191g00180 Vitis vinifera VIT_07s0191g00180 I 0.602
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.760
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.718
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.638
Ca_00750 Cicer arietinum Ca_00750 I 0.662
Ca_02070 Cicer arietinum Ca_02070 I 0.599
Ca_10527 Cicer arietinum Ca_10527 I 0.711
Ca_20151 Cicer arietinum Ca_20151 I 0.689
Cla010510 Citrullus lanatus Cla010510 I 0.711
Cla014344 Citrullus lanatus Cla014344 I 0.602
Cla014413 Citrullus lanatus Cla014413 I 0.603
Cla014769 Citrullus lanatus Cla014769 I 0.599
Cla018017 Citrullus lanatus Cla018017 I 0.819
Cla018641 Citrullus lanatus Cla018641 I 0.756
Pm011328 Prunus mume Pm011328 I 0.626
Pm015861 Prunus mume Pm015861 I 0.711
Pm018314 Prunus mume Pm018314 I 0.666
Pm026270 Prunus mume Pm026270 I 0.783
Pm026578 Prunus mume Pm026578 I 0.599
29815.m000499 Ricinus communis 29815.m000499 I 0.787
29822.m003500 Ricinus communis 29822.m003500 I 0.711
29983.m003123 Ricinus communis 29983.m003123 I 0.665
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.711
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.787
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.783
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.711
cassava4525.m1 Manihot esculenta cassava4525.m1 I 0.599
cassava45495.m1 Manihot esculenta cassava45495.m1 I 0.599
Cucsa.104200 Cucumis sativus Cucsa.104200 I 0.602
Cucsa.104950 Cucumis sativus Cucsa.104950 I 0.603
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.756
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.711
Cucsa.201240 Cucumis sativus Cucsa.201240 I 0.599
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.819
e_gw1.31.11.1 Physcomitrella patens e_gw1.31.11.1 I 0.602
e_gw1.34.11.1 Physcomitrella patens e_gw1.34.11.1 I 0.607
e_gw1.431.18.1 Physcomitrella patens e_gw1.431.18.1 I 0.602
e_gw1.65.5.1 Physcomitrella patens e_gw1.65.5.1 I 0.602
estExt_fgenesh2_pm.C_1080004 Physcomitrella patens estExt_fgenesh2_pm.C_1080004 I 0.602
gw1.28.15.1 Physcomitrella patens gw1.28.15.1 I 0.602
gw1.34.13.1 Physcomitrella patens gw1.34.13.1 I 0.602
gw1.65.7.1 Physcomitrella patens gw1.65.7.1 I 0.602
gw1.77.4.1 Physcomitrella patens gw1.77.4.1 I 0.602
mgf013301m Mimulus guttatus mgf013301m I 0.626
mgf019824m Mimulus guttatus mgf019824m I 0.806
mgf022748m Mimulus guttatus mgf022748m I 0.791
mgf025174m Mimulus guttatus mgf025174m I 0.611
Aquca_007_00158 Aquilegia coerulea Aquca_007_00158 I 0.599
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.704
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I 0.611
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.691
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.715
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.830
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.752
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.702
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.830
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.752
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.766
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I 0.611
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.691
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.683
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.830
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.701
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.776
Carubv10010076m.g Capsella rubella Carubv10010076m.g I 0.611
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.691
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.752
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.683
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.655
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.711
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.755
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.670
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.733
Eucgr.H04742 Eucalyptus grandis Eucgr.H04742 I 0.602
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.703
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.692
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.711
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.783
evm.TU.supercontig_55.70 Carica papaya evm.TU.supercontig_55.70 I 0.602
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.678
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.666
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.711
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.771
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.711
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.782
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.787
Gorai.003G016600 Gossypium raimondii Gorai.003G016600 I 0.599
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.711
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.631
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.639
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.783
Gorai.011G111500 Gossypium raimondii Gorai.011G111500 I 0.602
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.635
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.783
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
Lus10023159.g Linum usitatissimum Lus10023159.g I 0.602
Lus10024031.g Linum usitatissimum Lus10024031.g I 0.599
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.783
Lus10041719.g Linum usitatissimum Lus10041719.g I 0.599
MDP0000119544 Malus domestica MDP0000119544 I 0.786
MDP0000124827 Malus domestica MDP0000124827 I 0.711
MDP0000134241 Malus domestica MDP0000134241 I 0.786
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000230511 Malus domestica MDP0000230511 I 0.599
MDP0000311522 Malus domestica MDP0000311522 I 0.633
MDP0000737128 Malus domestica MDP0000737128 I 0.711
MDP0000738604 Malus domestica MDP0000738604 I 0.786
MDP0000909160 Malus domestica MDP0000909160 I 0.624
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.655
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.755
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.711
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.673
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.673
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.639
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.774
SapurV1A.0255s0060 Salix purpurea SapurV1A.0255s0060 I 0.599
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.626
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.711
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.711
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I 0.611
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.830
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.752
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.763
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.691
PK15535.1 Cannabis sativa PK15535.1 I 0.771
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.711
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.761