Bo2g061250 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo2g061250 T343727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.887 0.415
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.882 0.415
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.398
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g061250.1 TCP 103 225

Links

Other TCP family TFs
Other Brassica oleracea TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP1 Arabidopsis thaliana AT1G67260 D 0.882
PK19717.1 Cannabis sativa PK19717.1 D 0.860
PK12240.1 Cannabis sativa PK12240.1 D 0.887
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.861
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.908
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.845
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.914
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.859
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.861
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.921
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.921
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.858
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.851
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.921
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.872
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.868
mgf026636m Mimulus guttatus mgf026636m I 0.852
mgf024687m Mimulus guttatus mgf024687m I 0.824
mgf022233m Mimulus guttatus mgf022233m I 0.832
mgf019480m Mimulus guttatus mgf019480m I 0.855
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.895
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.902
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.875
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.879
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.846
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.914
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.840
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.879
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.870
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.829
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.847
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.847
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.856
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.844
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.910
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.846
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.842
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.859
MDP0000272980 Malus domestica MDP0000272980 I 0.900
MDP0000173048 Malus domestica MDP0000173048 I 0.909
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.836
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.856
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.900
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.867
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.889
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.859
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.913
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.866
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.906
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.844
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.890
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.871
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.874
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.859
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.824
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.855
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.881
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.869
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.881
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.916
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.867
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.926
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.879
Bra038350 Brassica rapa Bra038350 I 0.983
Bra004212 Brassica rapa Bra004212 I 0.848
Bra004097 Brassica rapa Bra004097 I 0.840
Bo6g103670 Brassica oleracea Bo6g103670 I 0.848
Bo6g099040 Brassica oleracea Bo6g099040 I 0.840
Bo2g055640 Brassica oleracea Bo2g055640 I 0.822
BRC2 Arabidopsis thaliana AT1G68800 I 0.928
TCM_019518 Theobroma cacao TCM_019518 I 0.877
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.893
30174.m008721 Ricinus communis 30174.m008721 I 0.833
30167.m000856 Ricinus communis 30167.m000856 I 0.885
29738.m001041 Ricinus communis 29738.m001041 I 0.918
Pm029002 Prunus mume Pm029002 I 0.904
Pm015499 Prunus mume Pm015499 I 0.835
Cla016709 Citrullus lanatus Cla016709 I 0.870
Cla007227 Citrullus lanatus Cla007227 I 0.869
Cla002355 Citrullus lanatus Cla002355 I 0.901
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.866
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.898
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.841
TCM_011874 Theobroma cacao TCM_011874 I 0.899
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.905
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.910
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.856
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.834
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.904
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.845
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.844
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.840
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.910