OMERI10G00680 (Oryza meridionalis)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 OMERI10G00680 T024676_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.738 0.738
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.738 0.738
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.738 0.738
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI10G00680.1 BBR 53 371
OMERI10G00680.2 BBR 1 42
OMERI10G00680.3 BBR 1 42

Links

Other BBR family TFs
Other Oryza meridionalis TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29780.m001393 Ricinus communis 29780.m001393 N 0.857
AMTR_s00024p00090860 Amborella trichopoda AMTR_s00024p00090860 N 0.714
Aquca_002_01194 Aquilegia coerulea Aquca_002_01194 N 0.881
BGIOSGA032378 Oryza indica BGIOSGA032378 N 1.000
BGIOSGA032380 Oryza indica BGIOSGA032380 N 0.868
Bo2g057480 Brassica oleracea Bo2g057480 N 0.762
Bo5g019930 Brassica oleracea Bo5g019930 N 0.786
Bo8g066170 Brassica oleracea Bo8g066170 N 0.762
Bo8g106640 Brassica oleracea Bo8g106640 N 0.762
Bostr.26959s0086 Boechera stricta Bostr.26959s0086 N 0.738
BPC1 Arabidopsis thaliana AT2G01930 D 0.762
BPC2 Arabidopsis lyrata fgenesh2_kg.1__1602__AT1G14685.1 I 0.786
BPC2 Arabidopsis thaliana AT1G14685 N 0.786
BPC3 Arabidopsis thaliana AT1G68120 N 0.738
Bra016686 Brassica rapa Bra016686 N 0.738
Bra026196 Brassica rapa Bra026196 N 0.786
Bra026813 Brassica rapa Bra026813 N 0.762
Bra033959 Brassica rapa Bra033959 N 0.738
BRADI3G21380 Brachypodium distachyon BRADI3G21380 N 1.000
BRADI3G21390 Brachypodium distachyon BRADI3G21390 N 1.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
Cagra.1111s0005 Capsella grandiflora Cagra.1111s0005 N 0.714
Cagra.3501s0027 Capsella grandiflora Cagra.3501s0027 N 0.786
Cagra.3834s0005 Capsella grandiflora Cagra.3834s0005 I 0.786
Carubv10009978m.g Capsella rubella Carubv10009978m.g N 0.786
Carubv10022023m.g Capsella rubella Carubv10022023m.g N 0.714
cassava39873.m1 Manihot esculenta cassava39873.m1 N 0.857
Ca_22170 Cicer arietinum Ca_22170 N 0.857
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.833
Cla005912 Citrullus lanatus Cla005912 N 0.786
Cucsa.026590 Cucumis sativus Cucsa.026590 N 0.786
Eucgr.H00573 Eucalyptus grandis Eucgr.H00573 N 0.857
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.833
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.857
GLYMA07G12150 Glycine max GLYMA07G12150 N 0.857
GLYMA07G12160 Glycine max GLYMA07G12160 N 0.857
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.857
GLYMA09G30040 Glycine max GLYMA09G30040 N 0.857
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.833
Gorai.005G154200 Gossypium raimondii Gorai.005G154200 N 0.762
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N 0.786
Gorai.012G183200 Gossypium raimondii Gorai.012G183200 N 0.786
GRMZM2G166230 Zea mays GRMZM2G166230 N 0.952
LjSGA_029364.2 Lotus japonicus LjSGA_029364.2 N 0.881
LPERR10G00500 Leersia perrieri LPERR10G00500 N 0.742
LPERR10G00510 Leersia perrieri LPERR10G00510 N 0.739
Lus10023543.g Linum usitatissimum Lus10023543.g N 0.857
Lus10040427.g Linum usitatissimum Lus10040427.g N 0.857
MDP0000320521 Malus domestica MDP0000320521 N 0.810
MDP0000826219 Malus domestica MDP0000826219 N 0.810
mgf007544m Mimulus guttatus mgf007544m N 0.857
mgf023519m Mimulus guttatus mgf023519m N 0.786
OB10G10530 Oryza brachyantha OB10G10530 N 0.734
OB10G10650 Oryza brachyantha OB10G10650 N 1.000
OBART10G00640 Oryza barthii OBART10G00640 N 1.000
OBART10G00650 Oryza barthii OBART10G00650 N 0.729
OGLUM10G00620 Oryza glumaepatula OGLUM10G00620 N 1.000
OGLUM10G00630 Oryza glumaepatula OGLUM10G00630 N 1.000
OGLUM10G00640 Oryza glumaepatula OGLUM10G00640 N 0.857
OLONG_022525 Oryza longistaminata OLONG_022525 N 0.826
OMERI10G00690 Oryza meridionalis OMERI10G00690 N 0.743
ONIVA10G01080 Oryza nivara ONIVA10G01080 N 1.000
ONIVA10G01090 Oryza nivara ONIVA10G01090 N 1.000
OPUNC03G13410 Oryza punctata OPUNC03G13410 N 1.000
OPUNC10G00600 Oryza punctata OPUNC10G00600 N 1.000
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.833
ORUFI10G00640 Oryza rufipogon ORUFI10G00640 N 1.000
ORUFI10G00650 Oryza rufipogon ORUFI10G00650 N 0.976
OS03G0237401 Oryza sativa OS03G0237401 N 0.735
OS10G0114500 Oryza sativa OS10G0114500 N 1.000
OS10G0115200 Oryza sativa OS10G0115200 N 1.000
OS10G0115500 Oryza sativa OS10G0115500 N 0.976
Pavir.Ba02367 Panicum virgatum Pavir.Ba02367 N 0.929
Pavir.Ia04968 Panicum virgatum Pavir.Ia04968 N 0.929
Pavir.J31488 Panicum virgatum Pavir.J31488 N 0.929
PGSC0003DMG400026958 Solanum tuberosum PGSC0003DMG400026958 N 0.810
PK28293.1 Cannabis sativa PK28293.1 N 0.810
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N 0.833
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N 0.833
POPTR_0012s03750 Populus trichocarpa POPTR_0012s03750 N 0.810
POPTR_0015s05200 Populus trichocarpa POPTR_0015s05200 N 0.857
POPTR_0015s05210 Populus trichocarpa POPTR_0015s05210 N 0.857
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.810
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.857
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.833
SapurV1A.0074s0330 Salix purpurea SapurV1A.0074s0330 N 0.857
SapurV1A.0074s0340 Salix purpurea SapurV1A.0074s0340 N 0.833
Sb02g009750 Sorghum bicolor Sb02g009750 N 0.952
Sb02g009782 Sorghum bicolor Sb02g009782 N 0.952
Si029480m.g Setaria italica Si029480m.g N 0.905
Si036337m.g Setaria italica Si036337m.g N 0.952
Solyc04g008380.2 Solanum lycopersicum Solyc04g008380.2 N 0.857
Solyc06g072370.2 Solanum lycopersicum Solyc06g072370.2 N 0.810
TCM_011212 Theobroma cacao TCM_011212 N 0.833
Thhalv10008428m.g Eutrema salsugineum Thhalv10008428m.g N 0.786
Thhalv10018977m.g Eutrema salsugineum Thhalv10018977m.g N 0.738
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.976
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N 0.857