Bostr.18473s0333 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.18473s0333 T142585_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.803 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.792 0.848
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.18473s0333.1.p C2H2 ZF 38 60
Bostr.18473s0333.1.p C2H2 ZF 86 108

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29780.m001393 Ricinus communis 29780.m001393 N
AMTR_s00024p00090860 Amborella trichopoda AMTR_s00024p00090860 N
Aquca_002_01194 Aquilegia coerulea Aquca_002_01194 N
BGIOSGA032378 Oryza indica BGIOSGA032378 N
BGIOSGA032380 Oryza indica BGIOSGA032380 N
Bo2g057480 Brassica oleracea Bo2g057480 N
Bo5g019930 Brassica oleracea Bo5g019930 N
Bo8g066170 Brassica oleracea Bo8g066170 N
Bo8g106640 Brassica oleracea Bo8g106640 N
Bostr.26959s0086 Boechera stricta Bostr.26959s0086 N
BPC1 Arabidopsis thaliana AT2G01930 D
BPC2 Arabidopsis lyrata fgenesh2_kg.1__1602__AT1G14685.1 I
BPC2 Arabidopsis thaliana AT1G14685 N
BPC3 Arabidopsis thaliana AT1G68120 N
Bra016686 Brassica rapa Bra016686 N
Bra026196 Brassica rapa Bra026196 N
Bra026813 Brassica rapa Bra026813 N
Bra033959 Brassica rapa Bra033959 N
BRADI3G21380 Brachypodium distachyon BRADI3G21380 N
BRADI3G21390 Brachypodium distachyon BRADI3G21390 N
C1orf35 Otolemur garnettii ENSOGAG00000010978 I
Cagra.1111s0005 Capsella grandiflora Cagra.1111s0005 N
Cagra.3501s0027 Capsella grandiflora Cagra.3501s0027 N
Cagra.3834s0005 Capsella grandiflora Cagra.3834s0005 I
Carubv10009978m.g Capsella rubella Carubv10009978m.g N
Carubv10022023m.g Capsella rubella Carubv10022023m.g N
cassava39873.m1 Manihot esculenta cassava39873.m1 N
Ca_22170 Cicer arietinum Ca_22170 N
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N
Cla005912 Citrullus lanatus Cla005912 N
Cucsa.026590 Cucumis sativus Cucsa.026590 N
Eucgr.H00573 Eucalyptus grandis Eucgr.H00573 N
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N
GLYMA05G26790 Glycine max GLYMA05G26790 N
GLYMA07G12150 Glycine max GLYMA07G12150 N
GLYMA07G12160 Glycine max GLYMA07G12160 N
GLYMA08G09780 Glycine max GLYMA08G09780 N
GLYMA09G30040 Glycine max GLYMA09G30040 N
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N
Gorai.005G154200 Gossypium raimondii Gorai.005G154200 N
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N
Gorai.012G183200 Gossypium raimondii Gorai.012G183200 N
GRMZM2G166230 Zea mays GRMZM2G166230 N
LjSGA_029364.2 Lotus japonicus LjSGA_029364.2 N
LPERR10G00500 Leersia perrieri LPERR10G00500 N
LPERR10G00510 Leersia perrieri LPERR10G00510 N
Lus10023543.g Linum usitatissimum Lus10023543.g N
Lus10040427.g Linum usitatissimum Lus10040427.g N
MDP0000320521 Malus domestica MDP0000320521 N
MDP0000826219 Malus domestica MDP0000826219 N
mgf007544m Mimulus guttatus mgf007544m N
mgf023519m Mimulus guttatus mgf023519m N
OB10G10530 Oryza brachyantha OB10G10530 N
OB10G10650 Oryza brachyantha OB10G10650 N
OBART10G00640 Oryza barthii OBART10G00640 N
OBART10G00650 Oryza barthii OBART10G00650 N
OGLUM10G00620 Oryza glumaepatula OGLUM10G00620 N
OGLUM10G00630 Oryza glumaepatula OGLUM10G00630 N
OGLUM10G00640 Oryza glumaepatula OGLUM10G00640 N
OLONG_022525 Oryza longistaminata OLONG_022525 N
OMERI10G00680 Oryza meridionalis OMERI10G00680 I
OMERI10G00690 Oryza meridionalis OMERI10G00690 N
ONIVA10G01080 Oryza nivara ONIVA10G01080 N
ONIVA10G01090 Oryza nivara ONIVA10G01090 N
OPUNC03G13410 Oryza punctata OPUNC03G13410 N
OPUNC10G00600 Oryza punctata OPUNC10G00600 N
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N
ORUFI10G00640 Oryza rufipogon ORUFI10G00640 N
ORUFI10G00650 Oryza rufipogon ORUFI10G00650 N
OS03G0237401 Oryza sativa OS03G0237401 N
OS10G0114500 Oryza sativa OS10G0114500 N
OS10G0115200 Oryza sativa OS10G0115200 N
OS10G0115500 Oryza sativa OS10G0115500 N
Pavir.Ba02367 Panicum virgatum Pavir.Ba02367 N
Pavir.Ia04968 Panicum virgatum Pavir.Ia04968 N
Pavir.J31488 Panicum virgatum Pavir.J31488 N
PGSC0003DMG400026958 Solanum tuberosum PGSC0003DMG400026958 N
PK28293.1 Cannabis sativa PK28293.1 N
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N
POPTR_0012s03750 Populus trichocarpa POPTR_0012s03750 N
POPTR_0015s05200 Populus trichocarpa POPTR_0015s05200 N
POPTR_0015s05210 Populus trichocarpa POPTR_0015s05210 N
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N
SapurV1A.0074s0330 Salix purpurea SapurV1A.0074s0330 N
SapurV1A.0074s0340 Salix purpurea SapurV1A.0074s0340 N
Sb02g009750 Sorghum bicolor Sb02g009750 N
Sb02g009782 Sorghum bicolor Sb02g009782 N
Si029480m.g Setaria italica Si029480m.g N
Si036337m.g Setaria italica Si036337m.g N
Solyc04g008380.2 Solanum lycopersicum Solyc04g008380.2 N
Solyc06g072370.2 Solanum lycopersicum Solyc06g072370.2 N
TCM_011212 Theobroma cacao TCM_011212 N
Thhalv10008428m.g Eutrema salsugineum Thhalv10008428m.g N
Thhalv10018977m.g Eutrema salsugineum Thhalv10018977m.g N
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N