NBR_0001068001 (Nippostrongylus brasiliensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 NBR_0001068001 T235250_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.768 0.500
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.768 0.500
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.768 0.500
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.685 0.326
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.685 0.326
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.685 0.326
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.685 0.326
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.685 0.326
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.685 0.326
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.685 0.326
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.685 0.326
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.685 0.326
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0001068001-mRNA-1 Homeodomain 27 72

Links

Other Homeodomain family TFs
Other Nippostrongylus brasiliensis TFs

1205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001066 Ricinus communis 29646.m001066 I
29815.m000499 Ricinus communis 29815.m000499 I
29822.m003500 Ricinus communis 29822.m003500 I
29983.m003123 Ricinus communis 29983.m003123 I
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I
Aquca_007_00158 Aquilegia coerulea Aquca_007_00158 I
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I
AT1G27045 Arabidopsis thaliana AT1G27045 I
ATHB-20 Arabidopsis thaliana AT3G01220 D
ATHB-21 Arabidopsis thaliana AT2G18550 D
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I
ATHB-51 Arabidopsis thaliana AT5G03790 D
ATHB-52 Arabidopsis thaliana AT5G53980 I
ATHB-53 Arabidopsis thaliana AT5G66700 D
ATHB20 Arabidopsis lyrata scaffold_300109.1 I
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I
Bo12274s010 Brassica oleracea Bo12274s010 I
Bo1g005450 Brassica oleracea Bo1g005450 I
Bo1g158730 Brassica oleracea Bo1g158730 I
Bo2g005230 Brassica oleracea Bo2g005230 I
Bo2g012410 Brassica oleracea Bo2g012410 I
Bo2g042250 Brassica oleracea Bo2g042250 I
Bo2g167730 Brassica oleracea Bo2g167730 I
Bo3g002560 Brassica oleracea Bo3g002560 I
Bo3g010120 Brassica oleracea Bo3g010120 I
Bo3g153930 Brassica oleracea Bo3g153930 I
Bo4g034490 Brassica oleracea Bo4g034490 I
Bo4g100070 Brassica oleracea Bo4g100070 I
Bo7g009960 Brassica oleracea Bo7g009960 I
Bo7g064620 Brassica oleracea Bo7g064620 I
Bo7g118140 Brassica oleracea Bo7g118140 I
Bo9g021730 Brassica oleracea Bo9g021730 I
Bo9g025880 Brassica oleracea Bo9g025880 I
Bo9g165360 Brassica oleracea Bo9g165360 I
Bo9g181710 Brassica oleracea Bo9g181710 I
Bo9g181720 Brassica oleracea Bo9g181720 I
Bostr.0568s0087 Boechera stricta Bostr.0568s0087 I
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I
Bostr.18351s0323 Boechera stricta Bostr.18351s0323 I
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I
Bostr.7867s1530 Boechera stricta Bostr.7867s1530 I
Bra005259 Brassica rapa Bra005259 I
Bra006285 Brassica rapa Bra006285 I
Bra008717 Brassica rapa Bra008717 I
Bra009510 Brassica rapa Bra009510 I
Bra012093 Brassica rapa Bra012093 I
Bra017780 Brassica rapa Bra017780 I
Bra018155 Brassica rapa Bra018155 I
Bra022687 Brassica rapa Bra022687 I
Bra023506 Brassica rapa Bra023506 I
Bra028820 Brassica rapa Bra028820 I
Bra037154 Brassica rapa Bra037154 I
Bra039135 Brassica rapa Bra039135 I
Bra040941 Brassica rapa Bra040941 I
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I
Cagra.2007s0029 Capsella grandiflora Cagra.2007s0029 I
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I
Cagra.5996s0004 Capsella grandiflora Cagra.5996s0004 I
Carubv10001498m.g Capsella rubella Carubv10001498m.g I
Carubv10002440m.g Capsella rubella Carubv10002440m.g I
Carubv10002831m.g Capsella rubella Carubv10002831m.g I
Carubv10003464m.g Capsella rubella Carubv10003464m.g I
Carubv10006436m.g Capsella rubella Carubv10006436m.g I
Carubv10014214m.g Capsella rubella Carubv10014214m.g I
Carubv10014603m.g Capsella rubella Carubv10014603m.g I
Carubv10024148m.g Capsella rubella Carubv10024148m.g I
Carubv10027040m.g Capsella rubella Carubv10027040m.g I
Carubv10027280m.g Capsella rubella Carubv10027280m.g I
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I
cassava14646.m1 Manihot esculenta cassava14646.m1 I
cassava34082.m1 Manihot esculenta cassava34082.m1 I
cassava39955.m1 Manihot esculenta cassava39955.m1 I
cassava4525.m1 Manihot esculenta cassava4525.m1 I
cassava45495.m1 Manihot esculenta cassava45495.m1 I
Ca_00750 Cicer arietinum Ca_00750 I
Ca_02070 Cicer arietinum Ca_02070 I
Ca_10527 Cicer arietinum Ca_10527 I
Ca_20151 Cicer arietinum Ca_20151 I
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I
Cla010510 Citrullus lanatus Cla010510 I
Cla014344 Citrullus lanatus Cla014344 I
Cla014413 Citrullus lanatus Cla014413 I
Cla014769 Citrullus lanatus Cla014769 I
Cla018017 Citrullus lanatus Cla018017 I
Cla018641 Citrullus lanatus Cla018641 I
Cucsa.104200 Cucumis sativus Cucsa.104200 I
Cucsa.104950 Cucumis sativus Cucsa.104950 I
Cucsa.125070 Cucumis sativus Cucsa.125070 I
Cucsa.158420 Cucumis sativus Cucsa.158420 I
Cucsa.201240 Cucumis sativus Cucsa.201240 I
Cucsa.378700 Cucumis sativus Cucsa.378700 I
estExt_fgenesh2_pm.C_1080004 Physcomitrella patens estExt_fgenesh2_pm.C_1080004 I
estExt_gwp_gw1.C_70211 Physcomitrella patens estExt_gwp_gw1.C_70211 D
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I
Eucgr.H04742 Eucalyptus grandis Eucgr.H04742 I
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I
evm.TU.supercontig_55.70 Carica papaya evm.TU.supercontig_55.70 I
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I
e_gw1.31.11.1 Physcomitrella patens e_gw1.31.11.1 I
e_gw1.34.11.1 Physcomitrella patens e_gw1.34.11.1 I
e_gw1.431.18.1 Physcomitrella patens e_gw1.431.18.1 I
e_gw1.65.5.1 Physcomitrella patens e_gw1.65.5.1 I
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I
gene29538-v1.0-hybrid Fragaria vesca gene29538-v1.0-hybrid I
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I
GLYMA03G34710 Glycine max GLYMA03G34710 I
GLYMA06G35050 Glycine max GLYMA06G35050 I
GLYMA09G37410 Glycine max GLYMA09G37410 I
GLYMA10G07440 Glycine max GLYMA10G07440 I
GLYMA13G05270 Glycine max GLYMA13G05270 I
GLYMA13G21330 Glycine max GLYMA13G21330 I
GLYMA18G49290 Glycine max GLYMA18G49290 I
GLYMA19G02490 Glycine max GLYMA19G02490 I
GLYMA19G37380 Glycine max GLYMA19G37380 I
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I
Gorai.003G016600 Gossypium raimondii Gorai.003G016600 I
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I
Gorai.011G111500 Gossypium raimondii Gorai.011G111500 I
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I
GRMZM2G034113 Zea mays GRMZM2G034113 I
GRMZM2G041462 Zea mays GRMZM2G041462 I
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I
GSMUA_Achr10G24810_001 Musa acuminata GSMUA_Achr10G24810_001 I
GSMUA_Achr10G30330_001 Musa acuminata GSMUA_Achr10G30330_001 I
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I
GSMUA_Achr6G10310_001 Musa acuminata GSMUA_Achr6G10310_001 I
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I
gw1.28.15.1 Physcomitrella patens gw1.28.15.1 I
gw1.34.13.1 Physcomitrella patens gw1.34.13.1 I
gw1.65.7.1 Physcomitrella patens gw1.65.7.1 I
gw1.77.4.1 Physcomitrella patens gw1.77.4.1 I
HAT7 Arabidopsis thaliana AT5G15150 I
HB-2 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3003249 I
HB-5 Arabidopsis thaliana AT4G36740 D
HB-5 Arabidopsis lyrata fgenesh2_kg.7__393__AT4G36740.1 I
HB53 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002241 I
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I
Lus10003492.g Linum usitatissimum Lus10003492.g I
Lus10008641.g Linum usitatissimum Lus10008641.g I
Lus10013103.g Linum usitatissimum Lus10013103.g I
Lus10023159.g Linum usitatissimum Lus10023159.g I
Lus10024031.g Linum usitatissimum Lus10024031.g I
Lus10035583.g Linum usitatissimum Lus10035583.g I
Lus10041719.g Linum usitatissimum Lus10041719.g I
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I
MDP0000119544 Malus domestica MDP0000119544 I
MDP0000124827 Malus domestica MDP0000124827 I
MDP0000134241 Malus domestica MDP0000134241 I
MDP0000146339 Malus domestica MDP0000146339 I
MDP0000230511 Malus domestica MDP0000230511 I
MDP0000311522 Malus domestica MDP0000311522 I
MDP0000737128 Malus domestica MDP0000737128 I
MDP0000738604 Malus domestica MDP0000738604 I
MDP0000789571 Malus domestica MDP0000789571 I
MDP0000909160 Malus domestica MDP0000909160 I
mgf013301m Mimulus guttatus mgf013301m I
mgf019824m Mimulus guttatus mgf019824m I
mgf022748m Mimulus guttatus mgf022748m I
MTR_1g061660 Medicago truncatula MTR_1g061660 I
MTR_5g019650 Medicago truncatula MTR_5g019650 I
MTR_5g019680 Medicago truncatula MTR_5g019680 I
MTR_6g011610 Medicago truncatula MTR_6g011610 I
MTR_7g103340 Medicago truncatula MTR_7g103340 I
MTR_8g089895 Medicago truncatula MTR_8g089895 I
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I
PGSC0003DMG400016148 Solanum tuberosum PGSC0003DMG400016148 I
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I
PK14809.1 Cannabis sativa PK14809.1 I
PK15535.1 Cannabis sativa PK15535.1 I
PK20392.1 Cannabis sativa PK20392.1 D
Pm011328 Prunus mume Pm011328 I
Pm015861 Prunus mume Pm015861 I
Pm018314 Prunus mume Pm018314 I
Pm026270 Prunus mume Pm026270 I
Pm026578 Prunus mume Pm026578 I
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I
POPTR_0005s12760 Populus trichocarpa POPTR_0005s12760 I
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I
POPTR_0007s12450 Populus trichocarpa POPTR_0007s12450 I
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I
PRUPE_ppa011343mg Prunus persica PRUPE_ppa011343mg I
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I
SapurV1A.0255s0060 Salix purpurea SapurV1A.0255s0060 I
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I
Sb02g030660 Sorghum bicolor Sb02g030660 I
Sb07g029150 Sorghum bicolor Sb07g029150 I
SELMODRAFT_108871 Selaginella moellendorffii SELMODRAFT_108871 I
SELMODRAFT_18196 Selaginella moellendorffii SELMODRAFT_18196 I
SELMODRAFT_19476 Selaginella moellendorffii SELMODRAFT_19476 I
SELMODRAFT_97273 Selaginella moellendorffii SELMODRAFT_97273 I
Si030983m.g Setaria italica Si030983m.g I
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I
Solyc11g010270.1 Solanum lycopersicum Solyc11g010270.1 I
TCM_000438 Theobroma cacao TCM_000438 I
TCM_018470 Theobroma cacao TCM_018470 I
TCM_022391 Theobroma cacao TCM_022391 I
TCM_031644 Theobroma cacao TCM_031644 I
Thhalv10005612m.g Eutrema salsugineum Thhalv10005612m.g I
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I
Thhalv10022814m.g Eutrema salsugineum Thhalv10022814m.g I
Thhalv10026207m.g Eutrema salsugineum Thhalv10026207m.g I
VIT_07s0191g00180 Vitis vinifera VIT_07s0191g00180 I
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I