cassava34009.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava34009.m1 T137867_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava34009.m1 C2H2 ZF 259 280
cassava34009.m1 C2H2 ZF 279 308

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14972 Aegilops tauschii F775_14972 N
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.806
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.773
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.773
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.806
WIP3 Arabidopsis thaliana AT1G08290 N
WIP6 Arabidopsis thaliana AT1G13290 N 0.773
WIP2 Arabidopsis thaliana AT3G57670 N 0.806
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.773
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.806
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.773
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N
Bo4g111000 Brassica oleracea Bo4g111000 N 0.806
Bo5g008880 Brassica oleracea Bo5g008880 N 0.760
Bo5g015200 Brassica oleracea Bo5g015200 N 0.773
Bo5g081360 Brassica oleracea Bo5g081360 N
Bo6g073120 Brassica oleracea Bo6g073120 N 0.806
Bo8g092070 Brassica oleracea Bo8g092070 N 0.806
Bo8g112550 Brassica oleracea Bo8g112550 N 0.760
Bra003295 Brassica rapa Bra003295 N 0.806
Bra007346 Brassica rapa Bra007346 N 0.805
Bra014612 Brassica rapa Bra014612 N 0.806
Bra018638 Brassica rapa Bra018638 N 0.760
Bra019822 Brassica rapa Bra019822 N 0.773
Bra031621 Brassica rapa Bra031621 N 0.760
PK03705.1 Cannabis sativa PK03705.1 N 0.806
PK05257.1 Cannabis sativa PK05257.1 N
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.806
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.773
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N
Carubv10009617m.g Capsella rubella Carubv10009617m.g N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.773
Carubv10012266m.g Capsella rubella Carubv10012266m.g N
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.806
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.782
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.773
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.806
Ca_07051 Cicer arietinum Ca_07051 N 0.759
Ca_07269 Cicer arietinum Ca_07269 N 0.806
Ca_08435 Cicer arietinum Ca_08435 N 0.773
Ca_16482 Cicer arietinum Ca_16482 N 0.782
Ca_21713 Cicer arietinum Ca_21713 N 0.796
Ca_24699 Cicer arietinum Ca_24699 N 0.773
Ca_27078 Cicer arietinum Ca_27078 N
Cla000184 Citrullus lanatus Cla000184 N 0.763
Cla002714 Citrullus lanatus Cla002714 N 0.773
Cla008187 Citrullus lanatus Cla008187 N 0.806
Cla008675 Citrullus lanatus Cla008675 N 0.788
Cla015481 Citrullus lanatus Cla015481 N
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.763
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.806
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.812
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.782
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.812
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.763
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.782
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.806
Cucsa.050260 Cucumis sativus Cucsa.050260 N
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.759
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.763
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.806
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.773
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.806
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.806
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.773
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.782
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.796
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.806
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.773
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.806
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.812
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.776
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.773
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.773
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.806
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.777
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.773
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.782
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.782
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.782
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.777
GLYMA13G01720 Glycine max GLYMA13G01720 N
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.777
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.782
GLYMA14G35140 Glycine max GLYMA14G35140 N
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.777
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.806
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.773
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.782
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.806
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.806
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.782
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.812
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.763
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.773
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.796
MLOC_2787 Hordeum vulgare MLOC_2787 N
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.796
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.773
LPERR08G16620 Leersia perrieri LPERR08G16620 N
LPERR09G10700 Leersia perrieri LPERR09G10700 N
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.759
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.759
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.773
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.786
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.812
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.812
Lus10033454.g Linum usitatissimum Lus10033454.g N
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.773
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.786
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.806
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.773
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.776
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N
MDP0000131949 Malus domestica MDP0000131949 N 0.782
MDP0000142494 Malus domestica MDP0000142494 N 0.769
MDP0000144266 Malus domestica MDP0000144266 N 0.771
MDP0000300013 Malus domestica MDP0000300013 N 0.782
MDP0000303483 Malus domestica MDP0000303483 N 0.773
MDP0000403797 Malus domestica MDP0000403797 N 0.812
MDP0000573922 Malus domestica MDP0000573922 N 0.761
MDP0000580545 Malus domestica MDP0000580545 N 0.812
MDP0000601705 Malus domestica MDP0000601705 N 0.806
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.782
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.776
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.806
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.777
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.806
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.763
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.773
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.816
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.773
mgf019910m Mimulus guttatus mgf019910m N 0.788
mgf022319m Mimulus guttatus mgf022319m N
mgf022981m Mimulus guttatus mgf022981m N
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.816
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.803
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.786
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.792
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.777
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.806
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.812
OBART06G20890 Oryza barthii OBART06G20890 N 0.796
OBART08G19670 Oryza barthii OBART08G19670 N
OB06G28740 Oryza brachyantha OB06G28740 N 0.773
OB08G26650 Oryza brachyantha OB08G26650 N
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.773
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.773
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.773
BGIOSGA031001 Oryza indica BGIOSGA031001 N
OMERI08G16450 Oryza meridionalis OMERI08G16450 N
OMERI09G11270 Oryza meridionalis OMERI09G11270 N
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.773
ONIVA08G21960 Oryza nivara ONIVA08G21960 N
ONIVA09G15100 Oryza nivara ONIVA09G15100 N
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.773
OPUNC08G17810 Oryza punctata OPUNC08G17810 N
OPUNC09G12930 Oryza punctata OPUNC09G12930 N
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.773
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N
OS06G0612300 Oryza sativa OS06G0612300 N 0.773
OS08G0504000 Oryza sativa OS08G0504000 N
OS09G0485600 Oryza sativa OS09G0485600 N
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.773
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.803
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.803
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.777
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.773
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.822
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.782
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.777
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.782
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.773
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.806
Pm000471 Prunus mume Pm000471 N 0.812
Pm001374 Prunus mume Pm001374 N 0.782
Pm025853 Prunus mume Pm025853 N 0.806
Pm029018 Prunus mume Pm029018 N 0.773
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.806
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.773
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.782
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.812
27810.m000651 Ricinus communis 27810.m000651 N 0.806
29908.m006047 Ricinus communis 29908.m006047 N 0.763
30055.m001542 Ricinus communis 30055.m001542 N 0.782
30061.m000294 Ricinus communis 30061.m000294 N 0.777
30169.m006417 Ricinus communis 30169.m006417 N 0.822
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.822
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.806
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.757
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.782
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.759
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.767
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.767
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.796
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.796
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.773
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.773
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.773
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.773
Si006616m.g Setaria italica Si006616m.g N 0.773
Si013819m.g Setaria italica Si013819m.g N
Si029897m.g Setaria italica Si029897m.g N
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.786
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.782
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.812
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.786
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.812
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.806
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.782
Sb02g028220 Sorghum bicolor Sb02g028220 N
Sb07g028010 Sorghum bicolor Sb07g028010 N
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.773
TCM_005892 Theobroma cacao TCM_005892 N 0.777
TCM_011858 Theobroma cacao TCM_011858 N 0.773
TCM_024788 Theobroma cacao TCM_024788 N 0.806
TCM_034881 Theobroma cacao TCM_034881 N 0.763
TCM_040610 Theobroma cacao TCM_040610 N 0.803
TCM_041441 Theobroma cacao TCM_041441 N 0.782
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.796
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.796
TRIUR3_30490 Triticum urartu TRIUR3_30490 N
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.773
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.782
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.782
NTT Vitis vinifera VIT_08s0007g08070 N 0.806
TT1 Vitis vinifera VIT_18s0001g05860 N 0.763
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.796
GRMZM2G071101 Zea mays GRMZM2G071101 N
GRMZM2G084014 Zea mays GRMZM2G084014 N
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.773
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.773
GRMZM2G445684 Zea mays GRMZM2G445684 N