Al_scaffold_0003_569 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0003_569 T252783_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.860 0.860
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_569 MADS box 10 52

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.721
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.822
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.744
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.744
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.767
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.767
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.721
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.744
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702
Ca_13275 Cicer arietinum Ca_13275 I 0.756
Ca_08934 Cicer arietinum Ca_08934 I 0.705
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Cla005226 Citrullus lanatus Cla005226 I 0.711
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.708
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.717
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.708
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.717
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.717
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.778
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.791
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.833
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.766
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.721
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.744
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.744
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.721
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.721
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
MDP0000925348 Malus domestica MDP0000925348 I 0.756
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
mgf026186m Mimulus guttatus mgf026186m I 0.727
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.708
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.708
Pm003257 Prunus mume Pm003257 I 0.702
Pm004396 Prunus mume Pm004396 I 0.756
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
30128.m008984 Ricinus communis 30128.m008984 I 0.708
30199.m000879 Ricinus communis 30199.m000879 I 0.723
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.723
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.791
TCM_026842 Theobroma cacao TCM_026842 I 0.814
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.708