PGSC0003DMG400000823 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400000823 T344249_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.907 0.416
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.859 0.380
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.853 0.372
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400002153 TCP 137 278

Links

Other TCP family TFs
Other Solanum tuberosum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.918
30167.m000856 Ricinus communis 30167.m000856 I 0.883
30174.m008721 Ricinus communis 30174.m008721 I 0.827
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.884
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.861
TCP1 Arabidopsis thaliana AT1G67260 D 0.859
BRC2 Arabidopsis thaliana AT1G68800 I 0.906
Bo2g055640 Brassica oleracea Bo2g055640 I 0.842
Bo2g061250 Brassica oleracea Bo2g061250 I 0.890
Bo6g099040 Brassica oleracea Bo6g099040 I 0.856
Bo6g103670 Brassica oleracea Bo6g103670 I 0.873
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.892
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.849
Bra004097 Brassica rapa Bra004097 I 0.852
Bra004212 Brassica rapa Bra004212 I 0.866
Bra034010 Brassica rapa Bra034010 I 0.836
Bra038350 Brassica rapa Bra038350 I 0.890
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.832
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.892
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.892
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.828
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.867
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.910
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.858
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.859
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.898
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.894
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.895
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.840
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.914
Cla002355 Citrullus lanatus Cla002355 I 0.904
Cla007227 Citrullus lanatus Cla007227 I 0.897
Cla016709 Citrullus lanatus Cla016709 I 0.879
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.908
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.873
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.901
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.856
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.850
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.864
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.912
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.866
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.879
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.906
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.896
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.892
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.903
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.900
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.888
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.900
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.895
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.889
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.925
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.870
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.826
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.851
MDP0000173048 Malus domestica MDP0000173048 I 0.910
MDP0000224810 Malus domestica MDP0000224810 N 0.831
MDP0000272980 Malus domestica MDP0000272980 I 0.896
mgf019480m Mimulus guttatus mgf019480m I 0.850
mgf022233m Mimulus guttatus mgf022233m I 0.836
mgf024687m Mimulus guttatus mgf024687m I 0.827
mgf026636m Mimulus guttatus mgf026636m I 0.910
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.895
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.899
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.905
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.840
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.914
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.852
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.950
PK12240.1 Cannabis sativa PK12240.1 D 0.907
PK19717.1 Cannabis sativa PK19717.1 D 0.853
Pm015499 Prunus mume Pm015499 I 0.839
Pm029002 Prunus mume Pm029002 I 0.907
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.911
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.932
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.864
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.856
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.850
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.907
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.839
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.837
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.922
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.854
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.871
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.836
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.836
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.840
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.948
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.964
TCM_011874 Theobroma cacao TCM_011874 I 0.931
TCM_019518 Theobroma cacao TCM_019518 I 0.898
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.835
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.923
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.849