Pavir.Ia00840 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.Ia00840 T203019_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00840.1.p GRAS 239 617

Links

Other GRAS family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.729
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.000
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.000
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.711
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.000
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.000
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.000
GAI Arabidopsis thaliana AT1G14920 N 0.714
RGL1 Arabidopsis thaliana AT1G66350 N 0.000
RGA Arabidopsis thaliana AT2G01570 N 0.000
RGL2 Arabidopsis thaliana AT3G03450 D 0.000
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.000
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.000
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.711
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.000
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.908
Bo5g149920 Brassica oleracea Bo5g149920 I 0.000
Bo7g078550 Brassica oleracea Bo7g078550 N 0.000
Bo9g160170 Brassica oleracea Bo9g160170 I 0.000
Bra013973 Brassica rapa Bra013973 I 0.000
Bra024875 Brassica rapa Bra024875 N 0.000
PK14700.1 Cannabis sativa PK14700.1 N 0.703
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.000
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.000
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.714
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.714
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.000
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.000
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.704
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.738
Ca_05046 Cicer arietinum Ca_05046 N 0.729
Ca_13295 Cicer arietinum Ca_13295 I 0.708
Cla003996 Citrullus lanatus Cla003996 N 0.700
Cla020062 Citrullus lanatus Cla020062 N 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.733
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.731
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.000
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.000
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.706
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.737
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.000
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.700
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.000
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.000
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.000
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.713
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.715
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.708
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.722
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.719
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.714
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.959
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.903
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.718
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.715
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.721
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.721
MDP0000237978 Malus domestica MDP0000237978 N 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.732
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.734
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.731
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.717
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.710
mgf008289m Mimulus guttatus mgf008289m N 0.733
mgf025772m Mimulus guttatus mgf025772m N 0.709
OBART03G31370 Oryza barthii OBART03G31370 N 0.906
OB03G38380 Oryza brachyantha OB03G38380 N 0.909
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.906
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.912
SLR1 Oryza indica BGIOSGA013420 N 0.906
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.906
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.906
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.912
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.903
SLR1 Oryza sativa OS03G0707600 N 0.903
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.994
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.723
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.731
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.728
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.717
Pm006304 Prunus mume Pm006304 N 0.000
Pm014329 Prunus mume Pm014329 I 0.726
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.729
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.708
29692.m000540 Ricinus communis 29692.m000540 N 0.737
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.719
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.722
SapurV1A.0230s0190 Salix purpurea SapurV1A.0230s0190 N 0.000
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.717
Si039400m.g Setaria italica Si039400m.g N 0.983
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.708
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.702
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.953
TCM_010965 Theobroma cacao TCM_010965 N 0.720
TCM_019165 Theobroma cacao TCM_019165 N 0.711
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.922
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.923
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.719
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.733
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.911
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.967