Gorai.009G241900 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.009G241900 T023378_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G241900.1 B3 118 220

Links

Other B3 family TFs
Other Gossypium raimondii TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_035002 Theobroma cacao TCM_035002 I 0.938
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.928
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.866
MDP0000256621 Malus domestica MDP0000256621 I 0.835
29908.m005953 Ricinus communis 29908.m005953 I 0.835
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.825
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.825
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.825
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.825
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.825
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.814
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.814
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.814
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.814
Pm019126 Prunus mume Pm019126 I 0.804
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.804
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.804
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.804
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.794
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.794
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.784
ARF17 Arabidopsis thaliana AT1G77850 N 0.773
Bra015651 Brassica rapa Bra015651 N 0.773
Bo6g121520 Brassica oleracea Bo6g121520 N 0.773
Bo6g081980 Brassica oleracea Bo6g081980 N 0.763
Bra003665 Brassica rapa Bra003665 N 0.763
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.763
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.763
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.753
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.753
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.753
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.742
Cla022413 Citrullus lanatus Cla022413 I 0.742
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.742
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.742
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.742
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N 0.740
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.735
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.732
ARF18 Oryza sativa OS06G0685700 I 0.732
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.732
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.732
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.732
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.732
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.732
Si005991m.g Setaria italica Si005991m.g I 0.732
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.732
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.732
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.732
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.732
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.732
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.732
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.732
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.732
OBART06G25230 Oryza barthii OBART06G25230 I 0.732
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.732
OB06G32920 Oryza brachyantha OB06G32920 I 0.732
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.732
MDP0000232116 Malus domestica MDP0000232116 N 0.732
Bra011162 Brassica rapa Bra011162 I 0.732
ARF16 Arabidopsis thaliana AT4G30080 D 0.732
Bo1g014600 Brassica oleracea Bo1g014600 I 0.732
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.732
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.732
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.732
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.732
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.724
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.722
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.722
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.722
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.722
TCM_043157 Theobroma cacao TCM_043157 I 0.722
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.722
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.722
MDP0000131481 Malus domestica MDP0000131481 I 0.722
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.722
MDP0000221322 Malus domestica MDP0000221322 I 0.722
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.722
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.722
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.711
Pm031275 Prunus mume Pm031275 I 0.711
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.711
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.711
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.711
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.711
PK17007.1 Cannabis sativa PK17007.1 I 0.711
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.711
mgf000336m Mimulus guttatus mgf000336m I 0.711
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
TCM_042067 Theobroma cacao TCM_042067 I 0.711
OBART10G13410 Oryza barthii OBART10G13410 I 0.711
OB10G20590 Oryza brachyantha OB10G20590 I 0.711
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.711
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.711
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.711
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.711
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.711
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.711
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.711
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.711
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.711
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.711
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.711
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.711
Bra024109 Brassica rapa Bra024109 I 0.711
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.711
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.711
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.711
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.711
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.711
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.711
ARF22 Oryza sativa OS10G0479900 I 0.711
Ca_26121 Cicer arietinum Ca_26121 I 0.711
TCM_022163 Theobroma cacao TCM_022163 I 0.711
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.711
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.711
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.711
Si034525m.g Setaria italica Si034525m.g I 0.711
Ca_02541 Cicer arietinum Ca_02541 I 0.708
mgf016139m Mimulus guttatus mgf016139m I 0.708
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.708
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.701
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.701
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.701
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.701
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.701
F775_32978 Aegilops tauschii F775_32978 I 0.701
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.701
Cla018574 Citrullus lanatus Cla018574 I 0.701
Pm030120 Prunus mume Pm030120 I 0.701
Cla013979 Citrullus lanatus Cla013979 I 0.701
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.701
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.701
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.701
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.701
Cla008883 Citrullus lanatus Cla008883 I 0.701
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.701
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.701
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.701
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.701
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.701
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.701
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.701
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.701
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.701
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.701
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.701
27538.m000327 Ricinus communis 27538.m000327 I 0.701
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.701
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.701
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.701
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.701
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.701
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.701
mgf005300m Mimulus guttatus mgf005300m I 0.701