TCM_035002 (Theobroma cacao)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 TCM_035002 T021540_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.763 0.763
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY16141 B3 203 305

Links

Other B3 family TFs
Other Theobroma cacao TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.938
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.928
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.887
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.876
29908.m005953 Ricinus communis 29908.m005953 I 0.876
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.876
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.876
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.866
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.856
MDP0000256621 Malus domestica MDP0000256621 I 0.845
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.845
Pm019126 Prunus mume Pm019126 I 0.845
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.835
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.825
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.825
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.825
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.814
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.814
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.804
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.804
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.804
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.794
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.784
Cla022413 Citrullus lanatus Cla022413 I 0.784
ARF17 Arabidopsis thaliana AT1G77850 N 0.784
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.773
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.773
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.773
Bo6g081980 Brassica oleracea Bo6g081980 N 0.773
Bra003665 Brassica rapa Bra003665 N 0.773
Bo6g121520 Brassica oleracea Bo6g121520 N 0.763
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.763
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.763
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.763
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.763
Bra011162 Brassica rapa Bra011162 I 0.763
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.763
ARF16 Arabidopsis thaliana AT4G30080 D 0.763
Bra015651 Brassica rapa Bra015651 N 0.763
Bo1g014600 Brassica oleracea Bo1g014600 I 0.763
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.763
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.763
TCM_043157 Theobroma cacao TCM_043157 I 0.753
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.753
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.753
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.753
MDP0000232116 Malus domestica MDP0000232116 N 0.753
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.753
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.753
Bo7g114200 Brassica oleracea Bo7g114200 I 0.753
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.742
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.742
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.742
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.742
Ca_26121 Cicer arietinum Ca_26121 I 0.742
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.742
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.742
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.742
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.742
ARF18 Oryza sativa OS06G0685700 I 0.742
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.742
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.742
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.742
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.742
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.742
OB06G32920 Oryza brachyantha OB06G32920 I 0.742
OBART06G25230 Oryza barthii OBART06G25230 I 0.742
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.742
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.742
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.742
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.742
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.742
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.742
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.742
Si005991m.g Setaria italica Si005991m.g I 0.742
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.742
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.742
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.742
Bra024109 Brassica rapa Bra024109 I 0.742
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.742
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.742
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.742
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.732
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.732
MDP0000221322 Malus domestica MDP0000221322 I 0.732
mgf024607m Mimulus guttatus mgf024607m I 0.732
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.732
Ca_02541 Cicer arietinum Ca_02541 I 0.732
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.732
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.732
MDP0000131481 Malus domestica MDP0000131481 I 0.732
Cla013979 Citrullus lanatus Cla013979 I 0.732
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.732
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.732
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.732
TCM_042067 Theobroma cacao TCM_042067 I 0.722
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.722
TCM_022163 Theobroma cacao TCM_022163 I 0.722
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.722
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.722
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.722
Pm031275 Prunus mume Pm031275 I 0.722
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.722
30078.m002329 Ricinus communis 30078.m002329 I 0.722
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.722
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.722
mgf000336m Mimulus guttatus mgf000336m I 0.722
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.722
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.722
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.722
OBART10G13410 Oryza barthii OBART10G13410 I 0.722
OBART04G18910 Oryza barthii OBART04G18910 I 0.722
OB10G20590 Oryza brachyantha OB10G20590 I 0.722
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.722
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.722
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.722
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.722
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.722
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.722
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.722
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.722
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.722
ARF10 Oryza indica BGIOSGA016767 I 0.722
PK17007.1 Cannabis sativa PK17007.1 I 0.722
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.722
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.722
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.722
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.722
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.722
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.722
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.722
OS04G0519700 Oryza sativa OS04G0519700 I 0.722
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.722
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.722
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.722
ARF22 Oryza sativa OS10G0479900 I 0.722
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.722
Si034525m.g Setaria italica Si034525m.g I 0.722
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.722
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.722
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.722
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.719
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.719
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.719
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.711
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.711
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.711
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.711
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.711
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.711
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.711
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.711
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.711
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.711
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.711
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.711
Si009541m.g Setaria italica Si009541m.g I 0.711
F775_32978 Aegilops tauschii F775_32978 I 0.711
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.711
Bra011955 Brassica rapa Bra011955 I 0.711
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.711
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.711
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.711
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.711
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.711
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.711
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.711
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.711
Bo4g071620 Brassica oleracea Bo4g071620 I 0.711
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.711
ARF10 Arabidopsis thaliana AT2G28350 I 0.711
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.711
mgf005300m Mimulus guttatus mgf005300m I 0.711
mgf016139m Mimulus guttatus mgf016139m I 0.711
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.711
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.711
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.711
Pm018533 Prunus mume Pm018533 I 0.711
Cla018574 Citrullus lanatus Cla018574 I 0.711
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.711
Pm030120 Prunus mume Pm030120 I 0.711
27538.m000327 Ricinus communis 27538.m000327 I 0.711
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.711
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.701
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.701
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.701
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.701
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.701
PK13064.1 Cannabis sativa PK13064.1 I 0.701
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.701
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.701
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.701
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.701
Si016509m.g Setaria italica Si016509m.g I 0.701
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.701
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.701
Cla008883 Citrullus lanatus Cla008883 I 0.701
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.701
27494.m000045 Ricinus communis 27494.m000045 I 0.701
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.701
ARF8 Oryza sativa OS02G0628600 I 0.701
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.701
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.701
OB02G32150 Oryza brachyantha OB02G32150 I 0.701
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.701
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.701
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.701
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.701
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.701
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.701