27494.m000045 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 27494.m000045 T022146_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.887 0.887
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
27494.m000045 B3 128 230

Links

Other B3 family TFs
Other Ricinus communis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.969
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.959
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.959
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.928
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.918
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.918
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.918
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.918
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.918
Cla008883 Citrullus lanatus Cla008883 I 0.918
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.918
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.918
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.918
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.908
PK13393.1 Cannabis sativa PK13393.1 I 0.908
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.907
Pm018533 Prunus mume Pm018533 I 0.907
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.907
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.907
TCM_043157 Theobroma cacao TCM_043157 I 0.907
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.897
Pm030120 Prunus mume Pm030120 I 0.897
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.897
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.897
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.897
Bra011162 Brassica rapa Bra011162 I 0.897
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.897
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.897
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.897
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.897
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.897
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.897
Cla018574 Citrullus lanatus Cla018574 I 0.897
Ca_02541 Cicer arietinum Ca_02541 I 0.896
TCM_022163 Theobroma cacao TCM_022163 I 0.887
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.887
PK17007.1 Cannabis sativa PK17007.1 I 0.887
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.887
mgf024607m Mimulus guttatus mgf024607m I 0.887
Bo1g014600 Brassica oleracea Bo1g014600 I 0.887
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.887
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.887
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.887
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.887
30078.m002329 Ricinus communis 30078.m002329 I 0.887
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.887
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.887
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.887
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.887
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.887
ARF16 Arabidopsis thaliana AT4G30080 D 0.887
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.887
Bo7g114200 Brassica oleracea Bo7g114200 I 0.887
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.887
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.887
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.885
ARF10 Arabidopsis thaliana AT2G28350 I 0.885
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.876
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.876
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.876
MDP0000131481 Malus domestica MDP0000131481 I 0.876
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.876
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.876
MDP0000221322 Malus domestica MDP0000221322 I 0.876
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.876
MDP0000750392 Malus domestica MDP0000750392 I 0.876
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.876
Si034525m.g Setaria italica Si034525m.g I 0.876
Bra024109 Brassica rapa Bra024109 I 0.876
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.876
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.876
Cla013979 Citrullus lanatus Cla013979 I 0.876
Pm031275 Prunus mume Pm031275 I 0.876
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.876
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.876
Ca_26121 Cicer arietinum Ca_26121 I 0.876
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.876
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.876
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.876
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.876
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.876
27538.m000327 Ricinus communis 27538.m000327 I 0.876
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.876
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.876
mgf005300m Mimulus guttatus mgf005300m I 0.876
OB10G20590 Oryza brachyantha OB10G20590 I 0.876
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.876
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.876
Bra011955 Brassica rapa Bra011955 I 0.875
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.875
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.875
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.875
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.875
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.875
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.875
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.875
F775_32978 Aegilops tauschii F775_32978 I 0.875
Bo4g071620 Brassica oleracea Bo4g071620 I 0.875
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.872
Si005991m.g Setaria italica Si005991m.g I 0.866
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.866
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.866
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.866
TCM_042067 Theobroma cacao TCM_042067 I 0.866
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.866
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.866
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.866
OB06G32920 Oryza brachyantha OB06G32920 I 0.866
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.866
OBART06G25230 Oryza barthii OBART06G25230 I 0.866
OBART10G13410 Oryza barthii OBART10G13410 I 0.866
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.866
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.866
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.866
PK13064.1 Cannabis sativa PK13064.1 I 0.866
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.866
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.866
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.866
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.866
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.866
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.866
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.866
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.866
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.866
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.866
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.866
ARF18 Oryza sativa OS06G0685700 I 0.866
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.866
ARF22 Oryza sativa OS10G0479900 I 0.866
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.866
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.866
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.866
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.866
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.866
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.866
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.866
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.866
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.865
mgf016139m Mimulus guttatus mgf016139m I 0.865
MDP0000237202 Malus domestica MDP0000237202 I 0.857
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.856
Ca_17136 Cicer arietinum Ca_17136 I 0.856
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.856
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.856
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.856
Si016509m.g Setaria italica Si016509m.g I 0.854
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.854
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.854
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.854
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.854
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.853
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.845
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.845
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.844
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.844
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.844
OB02G32150 Oryza brachyantha OB02G32150 I 0.844
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.844
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.844
ARF8 Oryza sativa OS02G0628600 I 0.844
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.844
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.844
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.844
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.844
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.835
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.833
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.833
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.833
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.833
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.833
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.826
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.825
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.825
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.825
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.825
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.825
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
mgf000336m Mimulus guttatus mgf000336m I 0.814
Ca_08488 Cicer arietinum Ca_08488 I 0.813
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.802
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.802
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.796
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.794
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.794
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.778
MTR_0041s0120 Medicago truncatula MTR_0041s0120 I 0.775
OS04G0519700 Oryza sativa OS04G0519700 I 0.773
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.773
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.773
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.773
OBART04G18910 Oryza barthii OBART04G18910 I 0.773
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.773
ARF10 Oryza indica BGIOSGA016767 I 0.773
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.773
OB04G25990 Oryza brachyantha OB04G25990 I 0.771
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.760
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.755
PK10136.1 Cannabis sativa PK10136.1 I 0.755
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.753
Si009541m.g Setaria italica Si009541m.g I 0.753
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.745
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.739
OB09G15010 Oryza brachyantha OB09G15010 N 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.722
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.719
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
Cla022413 Citrullus lanatus Cla022413 I 0.711
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.711
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.711
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
29908.m005953 Ricinus communis 29908.m005953 I 0.711
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.704
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.701
Pm019126 Prunus mume Pm019126 I 0.701
Ca_17624 Cicer arietinum Ca_17624 I 0.701
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.701
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.701
TCM_035002 Theobroma cacao TCM_035002 I 0.701
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.701