Lus10021467.g (Linum usitatissimum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Lus10021467.g T023504_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.885 0.885
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021467 B3 108 210

Links

Other B3 family TFs
Other Linum usitatissimum TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.990
Ca_02541 Cicer arietinum Ca_02541 I 0.958
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.938
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.938
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.938
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.928
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.928
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.928
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.928
Si034525m.g Setaria italica Si034525m.g I 0.928
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.928
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.928
Ca_26121 Cicer arietinum Ca_26121 I 0.928
MDP0000131481 Malus domestica MDP0000131481 I 0.928
MDP0000221322 Malus domestica MDP0000221322 I 0.928
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.928
OB10G20590 Oryza brachyantha OB10G20590 I 0.927
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.927
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.927
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.927
F775_32978 Aegilops tauschii F775_32978 I 0.927
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.921
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.918
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.918
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.918
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.918
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.918
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.918
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.918
Pm031275 Prunus mume Pm031275 I 0.918
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.918
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.918
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.918
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.917
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.917
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.917
OBART10G13410 Oryza barthii OBART10G13410 I 0.907
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.907
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.907
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.907
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.907
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.907
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.907
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.907
ARF18 Oryza sativa OS06G0685700 I 0.907
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.907
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.907
OBART06G25230 Oryza barthii OBART06G25230 I 0.907
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.907
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.907
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.907
ARF22 Oryza sativa OS10G0479900 I 0.907
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.907
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.907
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.907
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.907
Pm030120 Prunus mume Pm030120 I 0.907
Cla018574 Citrullus lanatus Cla018574 I 0.907
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.907
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.907
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.907
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.907
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.907
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.907
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.907
Si005991m.g Setaria italica Si005991m.g I 0.907
OB06G32920 Oryza brachyantha OB06G32920 I 0.907
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.907
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.907
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.907
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.907
TCM_042067 Theobroma cacao TCM_042067 I 0.907
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.907
mgf016139m Mimulus guttatus mgf016139m I 0.906
TCM_043157 Theobroma cacao TCM_043157 I 0.906
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.906
Si016509m.g Setaria italica Si016509m.g I 0.906
Bo4g071620 Brassica oleracea Bo4g071620 I 0.906
OB02G32150 Oryza brachyantha OB02G32150 I 0.906
ARF10 Arabidopsis thaliana AT2G28350 I 0.906
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.906
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.906
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.905
mgf024607m Mimulus guttatus mgf024607m I 0.897
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.897
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.897
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.897
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.897
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.897
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.897
TCM_022163 Theobroma cacao TCM_022163 I 0.897
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.897
30078.m002329 Ricinus communis 30078.m002329 I 0.897
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.897
PK17007.1 Cannabis sativa PK17007.1 I 0.897
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.897
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.897
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.896
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.896
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.896
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.896
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.896
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.896
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.896
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.896
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.896
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.896
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.896
ARF8 Oryza sativa OS02G0628600 I 0.896
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.896
Bra011955 Brassica rapa Bra011955 I 0.896
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.896
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.896
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.896
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.896
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.896
Cla008883 Citrullus lanatus Cla008883 I 0.887
Bra011162 Brassica rapa Bra011162 I 0.887
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.887
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.887
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.887
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.887
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.887
mgf005300m Mimulus guttatus mgf005300m I 0.887
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.887
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.887
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.887
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.887
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.887
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.885
Bo7g114200 Brassica oleracea Bo7g114200 I 0.885
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.885
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.885
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.885
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.885
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.885
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.876
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.876
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.876
ARF16 Arabidopsis thaliana AT4G30080 D 0.876
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.876
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.876
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.876
PK13064.1 Cannabis sativa PK13064.1 I 0.876
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.876
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.876
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.876
Bo1g014600 Brassica oleracea Bo1g014600 I 0.876
Pm018533 Prunus mume Pm018533 I 0.876
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.876
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.876
MDP0000750392 Malus domestica MDP0000750392 I 0.876
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.875
27494.m000045 Ricinus communis 27494.m000045 I 0.875
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.875
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.875
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.866
Ca_17136 Cicer arietinum Ca_17136 I 0.866
Bra024109 Brassica rapa Bra024109 I 0.866
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.866
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.866
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.865
Cla013979 Citrullus lanatus Cla013979 I 0.856
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.856
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.854
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.845
mgf000336m Mimulus guttatus mgf000336m I 0.844
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.833
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.825
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.825
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.825
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.825
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.825
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.823
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.816
Ca_08488 Cicer arietinum Ca_08488 I 0.813
OS04G0519700 Oryza sativa OS04G0519700 I 0.802
ARF10 Oryza indica BGIOSGA016767 I 0.802
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.802
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.802
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.802
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.802
OBART04G18910 Oryza barthii OBART04G18910 I 0.802
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
PK13393.1 Cannabis sativa PK13393.1 I 0.786
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.786
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
Si009541m.g Setaria italica Si009541m.g I 0.763
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.761
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.760
OB04G25990 Oryza brachyantha OB04G25990 I 0.760
TCM_029792 Theobroma cacao TCM_029792 I 0.755
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.750
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.750
OBART02G24860 Oryza barthii OBART02G24860 I 0.747
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.742
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.732
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.729
PK10136.1 Cannabis sativa PK10136.1 I 0.729
Pm019126 Prunus mume Pm019126 I 0.722
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.722
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.720
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.719
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.719
Ca_17624 Cicer arietinum Ca_17624 I 0.711
Cla022413 Citrullus lanatus Cla022413 I 0.711
MDP0000256621 Malus domestica MDP0000256621 I 0.711
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.708
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.708
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.708
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.708
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.708
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
TCM_035002 Theobroma cacao TCM_035002 I 0.701
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.701