Bo1g014600 (Brassica oleracea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bo1g014600 T018589_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g014600.1 B3 118 220

Links

Other B3 family TFs
Other Brassica oleracea TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra011162 Brassica rapa Bra011162 I 0.990
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.979
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.979
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.979
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.979
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.979
ARF16 Arabidopsis thaliana AT4G30080 D 0.979
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.969
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.969
TCM_043157 Theobroma cacao TCM_043157 I 0.969
Bo7g114200 Brassica oleracea Bo7g114200 I 0.969
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.969
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.959
Bra024109 Brassica rapa Bra024109 I 0.959
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.959
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.948
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.948
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.948
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.938
Pm018533 Prunus mume Pm018533 I 0.938
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.938
mgf024607m Mimulus guttatus mgf024607m I 0.938
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.938
PK17007.1 Cannabis sativa PK17007.1 I 0.938
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.928
OBART06G25230 Oryza barthii OBART06G25230 I 0.928
Si005991m.g Setaria italica Si005991m.g I 0.928
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.928
MDP0000221322 Malus domestica MDP0000221322 I 0.928
MDP0000131481 Malus domestica MDP0000131481 I 0.928
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.928
OB06G32920 Oryza brachyantha OB06G32920 I 0.928
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.928
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.928
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.928
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.928
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.928
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.928
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.928
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.928
mgf005300m Mimulus guttatus mgf005300m I 0.928
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.928
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.928
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.928
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.928
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.928
ARF18 Oryza sativa OS06G0685700 I 0.928
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.928
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.928
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.928
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.928
Pm030120 Prunus mume Pm030120 I 0.928
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.928
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.928
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.928
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.928
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.928
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.928
Cla018574 Citrullus lanatus Cla018574 I 0.928
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.928
TCM_042067 Theobroma cacao TCM_042067 I 0.918
Cla013979 Citrullus lanatus Cla013979 I 0.918
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.918
TCM_022163 Theobroma cacao TCM_022163 I 0.918
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.918
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.918
30078.m002329 Ricinus communis 30078.m002329 I 0.918
Pm031275 Prunus mume Pm031275 I 0.918
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.918
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.918
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.918
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.918
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.918
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.918
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.918
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.918
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.907
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.907
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.907
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.907
Si034525m.g Setaria italica Si034525m.g I 0.907
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.907
Ca_26121 Cicer arietinum Ca_26121 I 0.907
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.907
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.907
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.907
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.907
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.907
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.907
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.907
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.907
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.907
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.907
Ca_02541 Cicer arietinum Ca_02541 I 0.907
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.907
27538.m000327 Ricinus communis 27538.m000327 I 0.907
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.907
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.907
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.907
MDP0000750392 Malus domestica MDP0000750392 I 0.907
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.907
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.907
F775_32978 Aegilops tauschii F775_32978 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.897
Ca_17136 Cicer arietinum Ca_17136 I 0.897
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.897
OB10G20590 Oryza brachyantha OB10G20590 I 0.897
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.897
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.897
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.897
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
27494.m000045 Ricinus communis 27494.m000045 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.887
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.887
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.885
mgf016139m Mimulus guttatus mgf016139m I 0.885
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.884
PK13064.1 Cannabis sativa PK13064.1 I 0.876
ARF10 Arabidopsis thaliana AT2G28350 I 0.876
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.876
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.876
Bra011955 Brassica rapa Bra011955 I 0.876
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.876
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.876
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.876
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.876
Bo4g071620 Brassica oleracea Bo4g071620 I 0.866
mgf000336m Mimulus guttatus mgf000336m I 0.866
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.866
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.866
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.866
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.866
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.856
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.856
Si016509m.g Setaria italica Si016509m.g I 0.856
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.856
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.856
Cla008883 Citrullus lanatus Cla008883 I 0.856
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.856
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.854
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.845
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.845
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.845
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.845
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.845
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.845
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.845
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.845
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.845
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.845
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.845
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.845
ARF8 Oryza sativa OS02G0628600 I 0.845
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.835
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.835
OB02G32150 Oryza brachyantha OB02G32150 I 0.835
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.825
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.825
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.825
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.825
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.825
Ca_08488 Cicer arietinum Ca_08488 I 0.825
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.814
PK13393.1 Cannabis sativa PK13393.1 I 0.814
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.794
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.794
OBART04G18910 Oryza barthii OBART04G18910 I 0.794
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.794
OS04G0519700 Oryza sativa OS04G0519700 I 0.794
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.794
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
ARF10 Oryza indica BGIOSGA016767 I 0.794
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.794
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.794
OB04G25990 Oryza brachyantha OB04G25990 I 0.784
Si009541m.g Setaria italica Si009541m.g I 0.773
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.773
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.773
TCM_035002 Theobroma cacao TCM_035002 I 0.763
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.753
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.742
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.742
Cla022413 Citrullus lanatus Cla022413 I 0.742
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.742
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.742
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.742
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.742
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.732
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.732
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.732
Ca_17624 Cicer arietinum Ca_17624 I 0.732
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.722
Pm019126 Prunus mume Pm019126 I 0.722
29908.m005953 Ricinus communis 29908.m005953 I 0.722
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.722
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.722
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.722
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.722
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.722
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.722
OBART02G24860 Oryza barthii OBART02G24860 I 0.720
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.714
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.711
PK10136.1 Cannabis sativa PK10136.1 I 0.711
MDP0000256621 Malus domestica MDP0000256621 I 0.711
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.711
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.701
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.701
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.701
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.701
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.701