Gorai.009G107800 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.009G107800 T023371_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.887 0.887
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G107800.1 B3 111 213
Gorai.009G107800.2 B3 111 213
Gorai.009G107800.3 B3 111 213

Links

Other B3 family TFs
Other Gossypium raimondii TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.959
TCM_042067 Theobroma cacao TCM_042067 I 0.959
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.948
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.948
Pm031275 Prunus mume Pm031275 I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.948
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.938
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.938
MDP0000221322 Malus domestica MDP0000221322 I 0.938
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.938
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.938
Ca_02541 Cicer arietinum Ca_02541 I 0.938
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.938
MDP0000131481 Malus domestica MDP0000131481 I 0.938
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.938
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.938
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.938
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.938
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.928
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.928
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.928
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.928
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.928
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.928
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.928
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.928
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.928
27538.m000327 Ricinus communis 27538.m000327 I 0.928
PK17007.1 Cannabis sativa PK17007.1 I 0.928
Ca_26121 Cicer arietinum Ca_26121 I 0.928
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.928
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.928
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.928
Cla018574 Citrullus lanatus Cla018574 I 0.928
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.928
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.928
Pm030120 Prunus mume Pm030120 I 0.928
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.927
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.927
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.927
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.918
Si034525m.g Setaria italica Si034525m.g I 0.918
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.918
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.918
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.918
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.918
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.918
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.918
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.918
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.918
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.918
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.918
TCM_022163 Theobroma cacao TCM_022163 I 0.918
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.918
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.918
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.918
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.918
30078.m002329 Ricinus communis 30078.m002329 I 0.918
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.917
mgf016139m Mimulus guttatus mgf016139m I 0.917
F775_32978 Aegilops tauschii F775_32978 I 0.917
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.915
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.907
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.907
mgf005300m Mimulus guttatus mgf005300m I 0.907
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.907
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.907
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.907
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.907
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.907
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.907
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.907
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.907
OB10G20590 Oryza brachyantha OB10G20590 I 0.907
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.907
Bo4g071620 Brassica oleracea Bo4g071620 I 0.906
ARF18 Oryza sativa OS06G0685700 I 0.897
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.897
Ca_17136 Cicer arietinum Ca_17136 I 0.897
ARF22 Oryza sativa OS10G0479900 I 0.897
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.897
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.897
TCM_043157 Theobroma cacao TCM_043157 I 0.897
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.897
Si005991m.g Setaria italica Si005991m.g I 0.897
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.897
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.897
OBART10G13410 Oryza barthii OBART10G13410 I 0.897
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.897
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.897
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.897
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.897
OBART06G25230 Oryza barthii OBART06G25230 I 0.897
OB06G32920 Oryza brachyantha OB06G32920 I 0.897
MDP0000750392 Malus domestica MDP0000750392 I 0.897
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.897
Bra011162 Brassica rapa Bra011162 I 0.897
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.897
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.897
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.897
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.897
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.897
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.897
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.897
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.897
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.897
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.897
PK13064.1 Cannabis sativa PK13064.1 I 0.897
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.897
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.896
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.896
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.896
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.896
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.896
Bra011955 Brassica rapa Bra011955 I 0.896
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.895
Bo1g014600 Brassica oleracea Bo1g014600 I 0.887
ARF16 Arabidopsis thaliana AT4G30080 D 0.887
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.887
mgf000336m Mimulus guttatus mgf000336m I 0.887
Cla008883 Citrullus lanatus Cla008883 I 0.887
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.887
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.887
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.887
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.887
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.887
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.887
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.887
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.887
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.887
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.887
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.887
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.887
mgf024607m Mimulus guttatus mgf024607m I 0.887
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.887
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.887
ARF10 Arabidopsis thaliana AT2G28350 I 0.885
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.885
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.882
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.876
Pm018533 Prunus mume Pm018533 I 0.876
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.876
Cla013979 Citrullus lanatus Cla013979 I 0.876
Bo7g114200 Brassica oleracea Bo7g114200 I 0.876
Si016509m.g Setaria italica Si016509m.g I 0.875
OB02G32150 Oryza brachyantha OB02G32150 I 0.875
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.875
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.875
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.875
MDP0000237202 Malus domestica MDP0000237202 I 0.873
Bra024109 Brassica rapa Bra024109 I 0.866
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.865
ARF8 Oryza sativa OS02G0628600 I 0.865
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.865
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.865
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.865
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.865
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.865
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.865
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.865
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.865
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.865
Ca_08488 Cicer arietinum Ca_08488 I 0.857
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.856
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.854
27494.m000045 Ricinus communis 27494.m000045 I 0.845
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.845
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.844
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.835
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.833
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.833
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.827
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.814
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.814
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.796
Si009541m.g Setaria italica Si009541m.g I 0.794
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.792
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.786
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.784
OS04G0519700 Oryza sativa OS04G0519700 I 0.784
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.784
OBART04G18910 Oryza barthii OBART04G18910 I 0.784
ARF10 Oryza indica BGIOSGA016767 I 0.784
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.784
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.784
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.783
PK13393.1 Cannabis sativa PK13393.1 I 0.776
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
OB04G25990 Oryza brachyantha OB04G25990 I 0.760
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.742
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.740
MTR_0041s0120 Medicago truncatula MTR_0041s0120 I 0.738
TCM_029792 Theobroma cacao TCM_029792 I 0.736
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.732
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.732
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.730
Ca_17624 Cicer arietinum Ca_17624 I 0.722
Cla022413 Citrullus lanatus Cla022413 I 0.722
MDP0000256621 Malus domestica MDP0000256621 I 0.722
Pm019126 Prunus mume Pm019126 I 0.722
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.722
MDP0000215770 Malus domestica MDP0000215770 I 0.720
MDP0000912733 Malus domestica MDP0000912733 I 0.720
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.711
29908.m005953 Ricinus communis 29908.m005953 I 0.711
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
TCM_035002 Theobroma cacao TCM_035002 I 0.711
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.710
OBART02G24860 Oryza barthii OBART02G24860 I 0.707
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.701
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.701
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701