Cla022413 (Citrullus lanatus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cla022413 T022028_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022413 B3 107 209

Links

Other B3 family TFs
Other Citrullus lanatus TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.897
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.835
Pm019126 Prunus mume Pm019126 I 0.825
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.814
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.804
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.804
MDP0000256621 Malus domestica MDP0000256621 I 0.804
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.794
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.784
29908.m005953 Ricinus communis 29908.m005953 I 0.784
TCM_035002 Theobroma cacao TCM_035002 I 0.784
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.784
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.773
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.773
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.773
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.773
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.765
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.763
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.763
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.763
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.753
Bo7g114200 Brassica oleracea Bo7g114200 I 0.753
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.753
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.753
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.753
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.753
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.753
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.753
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.753
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.745
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.742
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.742
ARF18 Oryza sativa OS06G0685700 I 0.742
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.742
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.742
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.742
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.742
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.742
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.742
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.742
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.742
TCM_043157 Theobroma cacao TCM_043157 I 0.742
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.742
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.742
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.742
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.742
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.742
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.742
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.742
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.742
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.742
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.742
Si005991m.g Setaria italica Si005991m.g I 0.742
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.742
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.742
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.742
OB06G32920 Oryza brachyantha OB06G32920 I 0.742
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.742
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.742
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.742
Bra024109 Brassica rapa Bra024109 I 0.742
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.742
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.742
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.742
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.742
Bra011162 Brassica rapa Bra011162 I 0.742
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.742
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.742
ARF16 Arabidopsis thaliana AT4G30080 D 0.742
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.742
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.742
Bo1g014600 Brassica oleracea Bo1g014600 I 0.742
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.742
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.742
OBART06G25230 Oryza barthii OBART06G25230 I 0.742
Cla018574 Citrullus lanatus Cla018574 I 0.732
Cla013979 Citrullus lanatus Cla013979 I 0.732
Pm018533 Prunus mume Pm018533 I 0.732
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.732
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.732
Ca_26121 Cicer arietinum Ca_26121 I 0.732
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.732
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.732
mgf024607m Mimulus guttatus mgf024607m I 0.732
mgf005300m Mimulus guttatus mgf005300m I 0.732
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.732
Bo6g081980 Brassica oleracea Bo6g081980 N 0.732
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.732
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.732
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.732
Bra003665 Brassica rapa Bra003665 N 0.732
PK17007.1 Cannabis sativa PK17007.1 I 0.732
27538.m000327 Ricinus communis 27538.m000327 I 0.732
Pm030120 Prunus mume Pm030120 I 0.732
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.732
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.732
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.732
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.732
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.732
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.732
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.732
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.732
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.732
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.732
ARF8 Oryza sativa OS02G0628600 I 0.732
ARF22 Oryza sativa OS10G0479900 I 0.732
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.732
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.732
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.732
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.732
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.732
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.732
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.732
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.732
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.732
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.732
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.732
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.732
OBART10G13410 Oryza barthii OBART10G13410 I 0.732
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.732
MDP0000131481 Malus domestica MDP0000131481 I 0.732
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.732
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.732
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.732
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.732
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.732
MDP0000221322 Malus domestica MDP0000221322 I 0.732
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.732
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.732
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.732
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.729
Ca_02541 Cicer arietinum Ca_02541 I 0.729
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.729
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.729
OB02G32150 Oryza brachyantha OB02G32150 I 0.729
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.722
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.722
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.722
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.722
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.722
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.722
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.722
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.722
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
TCM_022163 Theobroma cacao TCM_022163 I 0.722
Si034525m.g Setaria italica Si034525m.g I 0.722
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.722
TCM_042067 Theobroma cacao TCM_042067 I 0.722
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.722
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.722
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.722
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.722
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.722
OB10G20590 Oryza brachyantha OB10G20590 I 0.722
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.722
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.722
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.722
Pm031275 Prunus mume Pm031275 I 0.722
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.722
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.722
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.722
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.722
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.722
30078.m002329 Ricinus communis 30078.m002329 I 0.722
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.719
Si016509m.g Setaria italica Si016509m.g I 0.719
MDP0000232116 Malus domestica MDP0000232116 N 0.714
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.714
Bo6g121520 Brassica oleracea Bo6g121520 N 0.711
PK13064.1 Cannabis sativa PK13064.1 I 0.711
ARF10 Arabidopsis thaliana AT2G28350 I 0.711
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.711
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.711
MDP0000750392 Malus domestica MDP0000750392 I 0.711
Bra015651 Brassica rapa Bra015651 N 0.711
F775_32978 Aegilops tauschii F775_32978 I 0.711
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.711
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.711
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.711
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.711
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.711
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
27494.m000045 Ricinus communis 27494.m000045 I 0.711
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.711
Cla008883 Citrullus lanatus Cla008883 I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.711
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.711
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.711
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.711
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.711
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.711
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.711
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.711
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.711
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.711
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.711
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.711
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.711
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.708
Bra011955 Brassica rapa Bra011955 I 0.701
ARF17 Arabidopsis thaliana AT1G77850 N 0.701
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.701
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.701
Ca_17136 Cicer arietinum Ca_17136 I 0.701
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.701
mgf000336m Mimulus guttatus mgf000336m I 0.701