27538.m000327 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 27538.m000327 T022147_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
27538.m000327 B3 112 214

Links

Other B3 family TFs
Other Ricinus communis TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.979
Pm031275 Prunus mume Pm031275 I 0.979
MDP0000221322 Malus domestica MDP0000221322 I 0.969
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.969
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.969
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.969
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.969
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.969
TCM_042067 Theobroma cacao TCM_042067 I 0.969
MDP0000131481 Malus domestica MDP0000131481 I 0.969
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.959
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.959
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.959
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.959
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.958
Cla018574 Citrullus lanatus Cla018574 I 0.948
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.948
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.948
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.948
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.948
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.948
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.948
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.948
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.948
Pm030120 Prunus mume Pm030120 I 0.948
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.948
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.948
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.948
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.948
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.938
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.938
Ca_26121 Cicer arietinum Ca_26121 I 0.938
TCM_022163 Theobroma cacao TCM_022163 I 0.938
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.938
PK17007.1 Cannabis sativa PK17007.1 I 0.938
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.938
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.938
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.938
30078.m002329 Ricinus communis 30078.m002329 I 0.938
OBART06G25230 Oryza barthii OBART06G25230 I 0.938
OB06G32920 Oryza brachyantha OB06G32920 I 0.938
ARF10 Arabidopsis thaliana AT2G28350 I 0.938
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.938
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.938
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.938
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.938
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.938
Si005991m.g Setaria italica Si005991m.g I 0.938
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.938
F775_32978 Aegilops tauschii F775_32978 I 0.938
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.938
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.938
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.938
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.938
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.938
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.938
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.938
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.938
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.938
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.938
ARF18 Oryza sativa OS06G0685700 I 0.938
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.938
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.938
Si034525m.g Setaria italica Si034525m.g I 0.938
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.938
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.938
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.934
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.928
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.928
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.928
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.928
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.928
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.928
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.928
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.928
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.928
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.928
mgf005300m Mimulus guttatus mgf005300m I 0.928
OB10G20590 Oryza brachyantha OB10G20590 I 0.928
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.928
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.928
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.928
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.928
Pm018533 Prunus mume Pm018533 I 0.928
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.927
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.927
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.927
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.927
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.927
mgf016139m Mimulus guttatus mgf016139m I 0.927
Ca_02541 Cicer arietinum Ca_02541 I 0.927
Si016509m.g Setaria italica Si016509m.g I 0.927
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.927
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.918
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.918
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.918
Bo7g114200 Brassica oleracea Bo7g114200 I 0.918
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.918
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.918
Bra011162 Brassica rapa Bra011162 I 0.918
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.918
MDP0000750392 Malus domestica MDP0000750392 I 0.918
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.918
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.918
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.918
ARF22 Oryza sativa OS10G0479900 I 0.918
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.918
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.918
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.918
OBART10G13410 Oryza barthii OBART10G13410 I 0.918
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.918
TCM_043157 Theobroma cacao TCM_043157 I 0.918
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.918
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.918
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.918
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.918
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.918
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.917
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.917
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.917
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.917
Bra011955 Brassica rapa Bra011955 I 0.917
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.917
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.917
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.917
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.917
ARF8 Oryza sativa OS02G0628600 I 0.917
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.917
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.917
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.917
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.916
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.915
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.907
PK13064.1 Cannabis sativa PK13064.1 I 0.907
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.907
ARF16 Arabidopsis thaliana AT4G30080 D 0.907
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.907
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.907
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.907
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.907
Bra024109 Brassica rapa Bra024109 I 0.907
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.907
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.907
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.907
Bo1g014600 Brassica oleracea Bo1g014600 I 0.907
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.907
mgf024607m Mimulus guttatus mgf024607m I 0.907
Cla013979 Citrullus lanatus Cla013979 I 0.907
Ca_17136 Cicer arietinum Ca_17136 I 0.907
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.907
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.906
Bo4g071620 Brassica oleracea Bo4g071620 I 0.906
OB02G32150 Oryza brachyantha OB02G32150 I 0.906
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.897
Cla008883 Citrullus lanatus Cla008883 I 0.897
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.897
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.897
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.897
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.897
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.896
MDP0000237202 Malus domestica MDP0000237202 I 0.889
mgf000336m Mimulus guttatus mgf000336m I 0.887
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.887
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.887
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.885
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.885
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.885
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.876
27494.m000045 Ricinus communis 27494.m000045 I 0.876
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.866
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.866
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.847
Ca_08488 Cicer arietinum Ca_08488 I 0.846
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.845
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.845
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.845
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.833
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.827
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
ARF10 Oryza indica BGIOSGA016767 I 0.804
OBART04G18910 Oryza barthii OBART04G18910 I 0.804
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.804
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.804
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.804
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.804
OS04G0519700 Oryza sativa OS04G0519700 I 0.804
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.804
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
PK13393.1 Cannabis sativa PK13393.1 I 0.796
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.786
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
Si009541m.g Setaria italica Si009541m.g I 0.773
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.773
OBART02G24860 Oryza barthii OBART02G24860 I 0.773
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.772
OB04G25990 Oryza brachyantha OB04G25990 I 0.771
MTR_0041s0120 Medicago truncatula MTR_0041s0120 I 0.762
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.742
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.742
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.740
MDP0000912733 Malus domestica MDP0000912733 I 0.740
MDP0000215770 Malus domestica MDP0000215770 I 0.740
Ca_17624 Cicer arietinum Ca_17624 I 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
Cla022413 Citrullus lanatus Cla022413 I 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.722
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.722
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.720
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.720
TCM_029792 Theobroma cacao TCM_029792 I 0.717
PK10136.1 Cannabis sativa PK10136.1 I 0.714
Pm019126 Prunus mume Pm019126 I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
TCM_035002 Theobroma cacao TCM_035002 I 0.711
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.701
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.701
MDP0000256621 Malus domestica MDP0000256621 I 0.701
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.701
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.701
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.701
29908.m005953 Ricinus communis 29908.m005953 I 0.701
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.701