Bo4g071620 (Brassica oleracea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bo4g071620 T018650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g071620.1 B3 112 214

Links

Other B3 family TFs
Other Brassica oleracea TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra011955 Brassica rapa Bra011955 I 0.990
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.979
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.979
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.979
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.979
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.979
ARF10 Arabidopsis thaliana AT2G28350 I 0.969
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.938
Ca_02541 Cicer arietinum Ca_02541 I 0.938
mgf016139m Mimulus guttatus mgf016139m I 0.927
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.927
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.927
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.918
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.918
TCM_042067 Theobroma cacao TCM_042067 I 0.918
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.917
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.907
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.907
Si034525m.g Setaria italica Si034525m.g I 0.907
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.907
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.907
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.907
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.907
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.907
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.907
MDP0000131481 Malus domestica MDP0000131481 I 0.907
MDP0000221322 Malus domestica MDP0000221322 I 0.907
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.907
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.907
Pm031275 Prunus mume Pm031275 I 0.907
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.907
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.906
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.906
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.906
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.906
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.906
F775_32978 Aegilops tauschii F775_32978 I 0.906
27538.m000327 Ricinus communis 27538.m000327 I 0.906
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.906
OB10G20590 Oryza brachyantha OB10G20590 I 0.906
Ca_26121 Cicer arietinum Ca_26121 I 0.897
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.897
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.897
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.897
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.897
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.897
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.897
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.897
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.897
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.897
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.897
TCM_043157 Theobroma cacao TCM_043157 I 0.896
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.896
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.895
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
Cla008883 Citrullus lanatus Cla008883 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.887
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.887
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.887
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
Cla018574 Citrullus lanatus Cla018574 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
PK13064.1 Cannabis sativa PK13064.1 I 0.887
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.887
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.887
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.887
PK17007.1 Cannabis sativa PK17007.1 I 0.887
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.887
Pm030120 Prunus mume Pm030120 I 0.887
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.887
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.887
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.887
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.887
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
Si016509m.g Setaria italica Si016509m.g I 0.885
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
OB02G32150 Oryza brachyantha OB02G32150 I 0.885
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.884
OBART06G25230 Oryza barthii OBART06G25230 I 0.876
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.876
Bra011162 Brassica rapa Bra011162 I 0.876
TCM_022163 Theobroma cacao TCM_022163 I 0.876
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.876
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.876
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.876
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.876
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.876
30078.m002329 Ricinus communis 30078.m002329 I 0.876
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.876
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.876
ARF18 Oryza sativa OS06G0685700 I 0.876
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.876
Si005991m.g Setaria italica Si005991m.g I 0.876
Pm018533 Prunus mume Pm018533 I 0.876
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.876
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.876
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.876
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.876
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.876
OB06G32920 Oryza brachyantha OB06G32920 I 0.876
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.876
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.876
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.876
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.876
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.876
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.875
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.875
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.875
ARF8 Oryza sativa OS02G0628600 I 0.875
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.875
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.875
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
27494.m000045 Ricinus communis 27494.m000045 I 0.875
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.875
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.875
Bo7g114200 Brassica oleracea Bo7g114200 I 0.875
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.875
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.875
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.875
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.866
MDP0000750392 Malus domestica MDP0000750392 I 0.866
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.866
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.866
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.866
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.866
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.866
ARF16 Arabidopsis thaliana AT4G30080 D 0.866
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.866
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.866
Ca_17136 Cicer arietinum Ca_17136 I 0.866
mgf005300m Mimulus guttatus mgf005300m I 0.866
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.866
Bo1g014600 Brassica oleracea Bo1g014600 I 0.866
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.866
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.865
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.865
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.865
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.865
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.865
mgf024607m Mimulus guttatus mgf024607m I 0.856
Bra024109 Brassica rapa Bra024109 I 0.856
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.856
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.856
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.856
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.856
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.854
mgf000336m Mimulus guttatus mgf000336m I 0.854
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.854
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.854
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.854
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.854
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.854
Cla013979 Citrullus lanatus Cla013979 I 0.845
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.845
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.844
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.844
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.833
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.833
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.825
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.825
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.825
Ca_08488 Cicer arietinum Ca_08488 I 0.824
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.823
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.816
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
OS04G0519700 Oryza sativa OS04G0519700 I 0.792
ARF10 Oryza indica BGIOSGA016767 I 0.792
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.792
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.792
OBART04G18910 Oryza barthii OBART04G18910 I 0.792
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.792
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.792
PK13393.1 Cannabis sativa PK13393.1 I 0.786
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.776
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.765
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
OB04G25990 Oryza brachyantha OB04G25990 I 0.760
Si009541m.g Setaria italica Si009541m.g I 0.753
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
29908.m005953 Ricinus communis 29908.m005953 I 0.742
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.742
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.740
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.740
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.740
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.740
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.740
TCM_029792 Theobroma cacao TCM_029792 I 0.736
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.729
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.722
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.720
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.719
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
TCM_035002 Theobroma cacao TCM_035002 I 0.711
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.708
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.708
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.708
PK10136.1 Cannabis sativa PK10136.1 I 0.708
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.708
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.708
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.708
Ca_17624 Cicer arietinum Ca_17624 I 0.701
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.701