PGSC0003DMG400024320 (Solanum tuberosum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 PGSC0003DMG400024320 T020738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.765 0.765
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400062489 B3 103 205

Links

Other B3 family TFs
Other Solanum tuberosum TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.949
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.816
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.816
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.816
Ca_26121 Cicer arietinum Ca_26121 I 0.816
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.814
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.814
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.814
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.814
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.814
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.812
Ca_02541 Cicer arietinum Ca_02541 I 0.812
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.806
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.804
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.804
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.804
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.804
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.804
TCM_042067 Theobroma cacao TCM_042067 I 0.804
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.804
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.804
MDP0000221322 Malus domestica MDP0000221322 I 0.804
MDP0000131481 Malus domestica MDP0000131481 I 0.804
PK17007.1 Cannabis sativa PK17007.1 I 0.804
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.804
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.804
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.804
mgf016139m Mimulus guttatus mgf016139m I 0.802
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.796
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.796
Pm030120 Prunus mume Pm030120 I 0.796
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.796
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.796
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.796
PK13393.1 Cannabis sativa PK13393.1 I 0.796
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.796
Pm031275 Prunus mume Pm031275 I 0.796
Cla018574 Citrullus lanatus Cla018574 I 0.796
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.796
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.796
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.796
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.796
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.796
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.796
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.796
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.794
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.794
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.794
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.794
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.794
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.794
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.794
Si034525m.g Setaria italica Si034525m.g I 0.794
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.794
mgf005300m Mimulus guttatus mgf005300m I 0.794
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.794
TCM_022163 Theobroma cacao TCM_022163 I 0.794
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.794
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.794
30078.m002329 Ricinus communis 30078.m002329 I 0.794
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.794
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.794
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.794
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.794
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.794
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.794
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.794
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.786
Ca_17136 Cicer arietinum Ca_17136 I 0.786
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.786
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.786
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.786
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.786
27538.m000327 Ricinus communis 27538.m000327 I 0.786
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.786
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.786
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.786
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.786
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.786
MDP0000750392 Malus domestica MDP0000750392 I 0.784
Bra011162 Brassica rapa Bra011162 I 0.784
Pm018533 Prunus mume Pm018533 I 0.784
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.784
OB02G32150 Oryza brachyantha OB02G32150 I 0.781
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.776
F775_32978 Aegilops tauschii F775_32978 I 0.776
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.776
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.776
TCM_043157 Theobroma cacao TCM_043157 I 0.776
OB10G20590 Oryza brachyantha OB10G20590 I 0.776
Bo4g071620 Brassica oleracea Bo4g071620 I 0.776
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.776
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.776
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.773
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.773
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.773
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.773
Cla008883 Citrullus lanatus Cla008883 I 0.773
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.773
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.773
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.773
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.773
mgf024607m Mimulus guttatus mgf024607m I 0.773
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.773
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.773
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.773
Bo1g014600 Brassica oleracea Bo1g014600 I 0.773
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.773
ARF22 Oryza sativa OS10G0479900 I 0.773
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.773
OBART06G25230 Oryza barthii OBART06G25230 I 0.773
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.773
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.773
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.773
Si005991m.g Setaria italica Si005991m.g I 0.773
OBART10G13410 Oryza barthii OBART10G13410 I 0.773
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.773
ARF18 Oryza sativa OS06G0685700 I 0.773
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.773
OB06G32920 Oryza brachyantha OB06G32920 I 0.773
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.771
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.771
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.768
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.765
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.765
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.765
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.765
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.765
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.765
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.765
ARF10 Arabidopsis thaliana AT2G28350 I 0.765
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.765
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.765
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.765
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.765
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.765
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.765
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.765
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.765
ARF16 Arabidopsis thaliana AT4G30080 D 0.765
Bra011955 Brassica rapa Bra011955 I 0.765
Bra024109 Brassica rapa Bra024109 I 0.763
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.763
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.763
Cla013979 Citrullus lanatus Cla013979 I 0.763
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.763
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.763
Si016509m.g Setaria italica Si016509m.g I 0.760
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.760
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.760
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.755
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.755
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.755
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.755
Bo7g114200 Brassica oleracea Bo7g114200 I 0.755
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.755
27494.m000045 Ricinus communis 27494.m000045 I 0.755
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.755
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.755
ARF8 Oryza sativa OS02G0628600 I 0.755
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.755
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.755
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.755
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.755
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.755
PK13064.1 Cannabis sativa PK13064.1 I 0.753
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.753
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.745
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.745
mgf000336m Mimulus guttatus mgf000336m I 0.745
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.745
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.745
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.745
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.742
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.740
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.740
TCM_029792 Theobroma cacao TCM_029792 I 0.736
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.735
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.735
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.735
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.735
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.724
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.724
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.724
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.724
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.724
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.720
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.711
Si009541m.g Setaria italica Si009541m.g I 0.711
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.708
PK10136.1 Cannabis sativa PK10136.1 I 0.704
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.704
OBART04G18910 Oryza barthii OBART04G18910 I 0.704
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.704
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.704
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.704
OS04G0519700 Oryza sativa OS04G0519700 I 0.704
ARF10 Oryza indica BGIOSGA016767 I 0.704
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.704