CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ia01695
(
Panicum virgatum
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Pavir.Ia01695
T023905_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.884
0.884
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia01695.1.p
B3
116
216
ETLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVPGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTEHGELCVGIRRAK
Links
Other
B3
family TFs
Other
Panicum virgatum
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI3G28950
Brachypodium distachyon
BRADI3G28950
I
0.979
MLOC_64795
Hordeum vulgare
MLOC_64795
I
0.979
F775_32978
Aegilops tauschii
F775_32978
I
0.979
Sb01g019130
Sorghum bicolor
Sb01g019130
I
0.979
Si034525m.g
Setaria italica
Si034525m.g
I
0.979
GRMZM2G153233
Zea mays
GRMZM2G153233
I
0.968
ORGLA10G0115500
Oryza glaberrima
ORGLA10G0115500
I
0.958
OB10G20590
Oryza brachyantha
OB10G20590
I
0.958
GRMZM2G159399
Zea mays
GRMZM2G159399
I
0.958
OMERI10G10210
Oryza meridionalis
OMERI10G10210
I
0.958
OGLUM10G13220
Oryza glumaepatula
OGLUM10G13220
I
0.958
OBART10G13410
Oryza barthii
OBART10G13410
I
0.958
LPERR10G09970
Leersia perrieri
LPERR10G09970
I
0.958
ARF22
Oryza sativa
OS10G0479900
I
0.958
ONIVA10G14700
Oryza nivara
ONIVA10G14700
I
0.958
ORUFI10G14150
Oryza rufipogon
ORUFI10G14150
I
0.958
BGIOSGA033142
Oryza indica
BGIOSGA033142
I
0.958
OPUNC10G11840
Oryza punctata
OPUNC10G11840
I
0.947
GSMUA_Achr11G22870_001
Musa acuminata
GSMUA_Achr11G22870_001
I
0.937
GSMUA_Achr4G18240_001
Musa acuminata
GSMUA_Achr4G18240_001
I
0.937
MDP0000221322
Malus domestica
MDP0000221322
I
0.926
Si005991m.g
Setaria italica
Si005991m.g
I
0.926
SapurV1A.0216s0160
Salix purpurea
SapurV1A.0216s0160
I
0.926
ORGLA06G0209500
Oryza glaberrima
ORGLA06G0209500
I
0.926
Pavir.J26437
Panicum virgatum
Pavir.J26437
I
0.926
AC207656.3_FG002
Zea mays
AC207656.3_FG002
I
0.926
OGLUM06G26560
Oryza glumaepatula
OGLUM06G26560
I
0.926
ARF18
Oryza sativa
OS06G0685700
I
0.926
OB06G32920
Oryza brachyantha
OB06G32920
I
0.926
Sb10g027790
Sorghum bicolor
Sb10g027790
I
0.926
Aquca_030_00152
Aquilegia coerulea
Aquca_030_00152
I
0.926
MDP0000131481
Malus domestica
MDP0000131481
I
0.926
OMERI06G25370
Oryza meridionalis
OMERI06G25370
I
0.926
OBART06G25230
Oryza barthii
OBART06G25230
I
0.926
ONIVA06G28270
Oryza nivara
ONIVA06G28270
I
0.926
OPUNC06G22960
Oryza punctata
OPUNC06G22960
I
0.926
ORUFI06G27120
Oryza rufipogon
ORUFI06G27120
I
0.926
Solyc11g069500.1
Solanum lycopersicum
Solyc11g069500.1
I
0.916
POPTR_0004s22130
Populus trichocarpa
POPTR_0004s22130
I
0.916
TCM_042067
Theobroma cacao
TCM_042067
I
0.916
Pm031275
Prunus mume
Pm031275
I
0.916
POPTR_0848s00200
Populus trichocarpa
POPTR_0848s00200
I
0.916
Eucgr.J00923
Eucalyptus grandis
Eucgr.J00923
I
0.916
TCM_043157
Theobroma cacao
TCM_043157
I
0.916
27538.m000327
Ricinus communis
27538.m000327
I
0.916
gene16844-v1.0-hybrid
Fragaria vesca
gene16844-v1.0-hybrid
I
0.916
BRADI1G33160
Brachypodium distachyon
BRADI1G33160
I
0.916
ARF10
Vitis vinifera
VIT_06s0004g02750
I
0.916
Ca_02541
Cicer arietinum
Ca_02541
I
0.905
cassava852.valid.m1
Manihot esculenta
cassava852.valid.m1
I
0.905
cassava23558.valid.m1
Manihot esculenta
cassava23558.valid.m1
I
0.905
Cla018574
Citrullus lanatus
Cla018574
I
0.905
Pm030120
Prunus mume
Pm030120
I
0.905
PGSC0003DMG400021560
Solanum tuberosum
PGSC0003DMG400021560
I
0.905
Ciclev10011194m.g
Citrus clementina
Ciclev10011194m.g
I
0.905
evm.TU.supercontig_65.4
Carica papaya
evm.TU.supercontig_65.4
I
0.905
orange1.1g005075m.g
Citrus sinensis
orange1.1g005075m.g
I
0.905
PRUPE_ppa002195mg
Prunus persica
PRUPE_ppa002195mg
I
0.905
gene09733-v1.0-hybrid
Fragaria vesca
gene09733-v1.0-hybrid
I
0.905
Cucsa.124410
Cucumis sativus
Cucsa.124410
I
0.905
GLYMA12G29720
Glycine max
GLYMA12G29720
I
0.905
Lus10021467.g
Linum usitatissimum
Lus10021467.g
I
0.905
orange1.1g005482m.g
Citrus sinensis
orange1.1g005482m.g
I
0.905
PRUPE_ppa002082mg
Prunus persica
PRUPE_ppa002082mg
I
0.905
PK17007.1
Cannabis sativa
PK17007.1
I
0.905
Solyc09g007810.2
Solanum lycopersicum
Solyc09g007810.2
I
0.905
MTR_2g094570
Medicago truncatula
MTR_2g094570
I
0.905
Ciclev10030860m.g
Citrus clementina
Ciclev10030860m.g
I
0.905
Pavir.Da00107
Panicum virgatum
Pavir.Da00107
I
0.897
Lus10019940.g
Linum usitatissimum
Lus10019940.g
I
0.895
chr3.LjT10E18.60.nc
Lotus japonicus
chr3.LjT10E18.60.nc
I
0.895
Ca_26121
Cicer arietinum
Ca_26121
I
0.895
Bra011162
Brassica rapa
Bra011162
I
0.895
Lus10026510.g
Linum usitatissimum
Lus10026510.g
I
0.895
GLYMA13G40030
Glycine max
GLYMA13G40030
I
0.895
TCM_022163
Theobroma cacao
TCM_022163
I
0.895
MTR_4g058930
Medicago truncatula
MTR_4g058930
I
0.895
POPTR_0010s23000
Populus trichocarpa
POPTR_0010s23000
I
0.895
POPTR_0008s03890
Populus trichocarpa
POPTR_0008s03890
I
0.895
30078.m002329
Ricinus communis
30078.m002329
I
0.895
GSMUA_Achr8G18930_001
Musa acuminata
GSMUA_Achr8G18930_001
I
0.895
Gorai.009G107800
Gossypium raimondii
Gorai.009G107800
I
0.895
GLYMA13G20382
Glycine max
GLYMA13G20382
I
0.895
Gorai.006G166400
Gossypium raimondii
Gorai.006G166400
I
0.895
Lus10016091.g
Linum usitatissimum
Lus10016091.g
I
0.895
PGSC0003DMG400008081
Solanum tuberosum
PGSC0003DMG400008081
I
0.885
mgf005300m
Mimulus guttatus
mgf005300m
I
0.884
evm.TU.supercontig_53.88
Carica papaya
evm.TU.supercontig_53.88
I
0.884
Eucgr.K01240
Eucalyptus grandis
Eucgr.K01240
I
0.884
SapurV1A.0518s0120
Salix purpurea
SapurV1A.0518s0120
I
0.884
SapurV1A.0657s0050
Salix purpurea
SapurV1A.0657s0050
I
0.884
PK13064.1
Cannabis sativa
PK13064.1
I
0.884
Thhalv10024601m.g
Eutrema salsugineum
Thhalv10024601m.g
I
0.884
Carubv10004220m.g
Capsella rubella
Carubv10004220m.g
I
0.884
Cagra.1744s0020
Capsella grandiflora
Cagra.1744s0020
I
0.884
cassava37879.valid.m1
Manihot esculenta
cassava37879.valid.m1
I
0.884
Cla008883
Citrullus lanatus
Cla008883
I
0.884
cassava5984.valid.m1
Manihot esculenta
cassava5984.valid.m1
I
0.884
Cucsa.386060
Cucumis sativus
Cucsa.386060
I
0.884
Bostr.7867s0859
Boechera stricta
Bostr.7867s0859
I
0.884
mgf016139m
Mimulus guttatus
mgf016139m
I
0.884
VIT_08s0040g01810
Vitis vinifera
VIT_08s0040g01810
I
0.884
ARF16
Arabidopsis lyrata
scaffold_701217.1
I
0.884
Bo7g114200
Brassica oleracea
Bo7g114200
I
0.884
MTR_1g064430
Medicago truncatula
MTR_1g064430
I
0.884
OLONG_021130
Oryza longistaminata
OLONG_021130
I
0.884
GLYMA10G06080
Glycine max
GLYMA10G06080
I
0.884
Bo4g071620
Brassica oleracea
Bo4g071620
I
0.884
PRUPE_ppa002710mg
Prunus persica
PRUPE_ppa002710mg
I
0.884
ARF16
Arabidopsis thaliana
AT4G30080
D
0.884
Bo1g014600
Brassica oleracea
Bo1g014600
I
0.884
OB02G32150
Oryza brachyantha
OB02G32150
I
0.874
LPERR06G21020
Leersia perrieri
LPERR06G21020
I
0.874
Ciclev10027901m.g
Citrus clementina
Ciclev10027901m.g
I
0.874
Eucgr.G02838
Eucalyptus grandis
Eucgr.G02838
I
0.874
Carubv10022755m.g
Capsella rubella
Carubv10022755m.g
I
0.874
GRMZM2G081406
Zea mays
GRMZM2G081406
I
0.874
Sb04g026610
Sorghum bicolor
Sb04g026610
I
0.874
mgf024607m
Mimulus guttatus
mgf024607m
I
0.874
Bostr.27991s0089
Boechera stricta
Bostr.27991s0089
I
0.874
ARF10
Arabidopsis lyrata
fgenesh2_kg.4__731__AT2G28350.1
I
0.874
Bra011955
Brassica rapa
Bra011955
I
0.874
SapurV1A.0049s0400
Salix purpurea
SapurV1A.0049s0400
I
0.874
Thhalv10016329m.g
Eutrema salsugineum
Thhalv10016329m.g
I
0.874
ARF10
Arabidopsis thaliana
AT2G28350
I
0.874
Bra024109
Brassica rapa
Bra024109
I
0.874
orange1.1g004896m.g
Citrus sinensis
orange1.1g004896m.g
I
0.874
GLYMA12G08110
Glycine max
GLYMA12G08110
I
0.874
GLYMA11G20490
Glycine max
GLYMA11G20490
I
0.874
MDP0000750392
Malus domestica
MDP0000750392
I
0.874
Gorai.003G142500
Gossypium raimondii
Gorai.003G142500
I
0.874
Cagra.1876s0007
Capsella grandiflora
Cagra.1876s0007
I
0.874
ARF16
Vitis vinifera
VIT_13s0019g04380
I
0.874
Ca_17136
Cicer arietinum
Ca_17136
I
0.874
Pm018533
Prunus mume
Pm018533
I
0.874
Si016509m.g
Setaria italica
Si016509m.g
I
0.874
LPERR02G20290
Leersia perrieri
LPERR02G20290
I
0.863
gene23280-v1.0-hybrid
Fragaria vesca
gene23280-v1.0-hybrid
I
0.863
ORUFI02G26180
Oryza rufipogon
ORUFI02G26180
I
0.863
SELMODRAFT_443304
Selaginella moellendorffii
SELMODRAFT_443304
I
0.863
AMTR_s00155p00082980
Amborella trichopoda
AMTR_s00155p00082980
I
0.863
Gorai.012G004800
Gossypium raimondii
Gorai.012G004800
I
0.863
ARF8
Oryza sativa
OS02G0628600
I
0.863
SELMODRAFT_444549
Selaginella moellendorffii
SELMODRAFT_444549
I
0.863
BGIOSGA008657
Oryza indica
BGIOSGA008657
I
0.863
ORGLA02G0215100
Oryza glaberrima
ORGLA02G0215100
I
0.863
POPTR_0016s09150
Populus trichocarpa
POPTR_0016s09150
I
0.863
SapurV1A.0986s0010
Salix purpurea
SapurV1A.0986s0010
I
0.863
GLYMA19G36571
Glycine max
GLYMA19G36571
I
0.863
OMERI02G24320
Oryza meridionalis
OMERI02G24320
I
0.863
OGLUM02G25270
Oryza glumaepatula
OGLUM02G25270
I
0.863
estExt_fgenesh1_pm.C_3390006
Physcomitrella patens
estExt_fgenesh1_pm.C_3390006
I
0.863
Cucsa.137650
Cucumis sativus
Cucsa.137650
I
0.863
OPUNC02G22610
Oryza punctata
OPUNC02G22610
I
0.863
ONIVA02G27180
Oryza nivara
ONIVA02G27180
I
0.863
Gorai.011G238900
Gossypium raimondii
Gorai.011G238900
I
0.853
GRMZM2G390641
Zea mays
GRMZM2G390641
I
0.853
GLYMA20G32040
Glycine max
GLYMA20G32040
I
0.853
GLYMA10G35481
Glycine max
GLYMA10G35481
I
0.853
Cla013979
Citrullus lanatus
Cla013979
I
0.853
mgf000336m
Mimulus guttatus
mgf000336m
I
0.853
MTR_1g094960
Medicago truncatula
MTR_1g094960
I
0.853
27494.m000045
Ricinus communis
27494.m000045
I
0.853
MLOC_77438
Hordeum vulgare
MLOC_77438
I
0.853
OLONG_000617
Oryza longistaminata
OLONG_000617
I
0.853
e_gw1.279.55.1
Physcomitrella patens
e_gw1.279.55.1
I
0.845
BRADI3G49320
Brachypodium distachyon
BRADI3G49320
I
0.844
AMTR_s00148p00046020
Amborella trichopoda
AMTR_s00148p00046020
I
0.842
SapurV1A.0141s0090
Salix purpurea
SapurV1A.0141s0090
I
0.842
Gorai.013G267100
Gossypium raimondii
Gorai.013G267100
I
0.842
POPTR_0006s12930
Populus trichocarpa
POPTR_0006s12930
I
0.825
Lus10040403.g
Linum usitatissimum
Lus10040403.g
I
0.821
Lus10023519.g
Linum usitatissimum
Lus10023519.g
I
0.821
Traes_6DL_52A25BEA4
Triticum aestivum
Traes_6DL_52A25BEA4
I
0.819
LPERR04G15300
Leersia perrieri
LPERR04G15300
I
0.811
SELMODRAFT_451564
Selaginella moellendorffii
SELMODRAFT_451564
I
0.804
SELMODRAFT_437622
Selaginella moellendorffii
SELMODRAFT_437622
I
0.804
PK13393.1
Cannabis sativa
PK13393.1
I
0.789
Pavir.Gb00635
Panicum virgatum
Pavir.Gb00635
I
0.781
Pavir.J24081
Panicum virgatum
Pavir.J24081
I
0.781
Traes_2BL_A1A475B0F
Triticum aestivum
Traes_2BL_A1A475B0F
I
0.779
ONIVA06G31350
Oryza nivara
ONIVA06G31350
I
0.768
OPUNC04G16630
Oryza punctata
OPUNC04G16630
I
0.768
OB04G25990
Oryza brachyantha
OB04G25990
I
0.768
OS04G0519700
Oryza sativa
OS04G0519700
I
0.768
ARF10
Oryza indica
BGIOSGA016767
I
0.768
OMERI04G15770
Oryza meridionalis
OMERI04G15770
I
0.768
OBART04G18910
Oryza barthii
OBART04G18910
I
0.768
OGLUM01G18360
Oryza glumaepatula
OGLUM01G18360
I
0.768
ORGLA04G0160200
Oryza glaberrima
ORGLA04G0160200
I
0.768
PGSC0003DMG400024320
Solanum tuberosum
PGSC0003DMG400024320
I
0.768
Si009541m.g
Setaria italica
Si009541m.g
I
0.758
Solyc06g075150.2
Solanum lycopersicum
Solyc06g075150.2
I
0.758
OBART02G24860
Oryza barthii
OBART02G24860
I
0.747
Solyc10g086130.1
Solanum lycopersicum
Solyc10g086130.1
I
0.747
Ca_08488
Cicer arietinum
Ca_08488
I
0.747
ORUFI04G20430
Oryza rufipogon
ORUFI04G20430
I
0.726
BRADI5G15904
Brachypodium distachyon
BRADI5G15904
I
0.726
PK10136.1
Cannabis sativa
PK10136.1
I
0.716
PDK_20s1359671g001
Phoenix dactylifera
PDK_20s1359671g001
I
0.716
Pavir.J03524
Panicum virgatum
Pavir.J03524
I
0.716
MTR_7g101280
Medicago truncatula
MTR_7g101280
I
0.705
chr1.LjT31L11.90.nd
Lotus japonicus
chr1.LjT31L11.90.nd
I
0.705
MTR_0041s0110
Medicago truncatula
MTR_0041s0110
I
0.705
Pavir.J37640
Panicum virgatum
Pavir.J37640
I
0.705
PRUPE_ppa003136mg
Prunus persica
PRUPE_ppa003136mg
I
0.705
MTR_7g101275
Medicago truncatula
MTR_7g101275
I
0.705