chr1.LjT31L11.90.nd (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 chr1.LjT31L11.90.nd T024384_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT31L11.90.nd B3 146 248

Links

Other B3 family TFs
Other Lotus japonicus TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000256621 Malus domestica MDP0000256621 I 0.876
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.856
Pm019126 Prunus mume Pm019126 I 0.845
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.845
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.845
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.835
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.835
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.835
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.835
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.825
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.825
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.825
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.825
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.825
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.814
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.814
29908.m005953 Ricinus communis 29908.m005953 I 0.814
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.804
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.804
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.804
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.804
TCM_035002 Theobroma cacao TCM_035002 I 0.804
Cla022413 Citrullus lanatus Cla022413 I 0.804
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.794
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.794
MDP0000232116 Malus domestica MDP0000232116 N 0.784
Ca_11175 Cicer arietinum Ca_11175 N 0.783
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.776
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.773
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.773
Bo6g081980 Brassica oleracea Bo6g081980 N 0.763
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.763
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.763
Bra003665 Brassica rapa Bra003665 N 0.763
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.763
mgf016139m Mimulus guttatus mgf016139m I 0.753
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.753
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.753
ARF17 Arabidopsis thaliana AT1G77850 N 0.753
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.753
OB02G32150 Oryza brachyantha OB02G32150 I 0.753
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.753
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.742
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.742
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.742
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.742
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.742
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.742
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.742
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.742
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.742
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.742
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.742
Cla008883 Citrullus lanatus Cla008883 I 0.742
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.742
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.742
ARF18 Oryza sativa OS06G0685700 I 0.742
Si005991m.g Setaria italica Si005991m.g I 0.742
ARF22 Oryza sativa OS10G0479900 I 0.742
ARF8 Oryza sativa OS02G0628600 I 0.742
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.742
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.742
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.742
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.742
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.742
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.742
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.742
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.742
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.742
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.742
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.742
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.742
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.742
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.742
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.742
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.742
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.742
Bo6g121520 Brassica oleracea Bo6g121520 N 0.742
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.742
OB06G32920 Oryza brachyantha OB06G32920 I 0.742
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.742
OBART10G13410 Oryza barthii OBART10G13410 I 0.742
Bra015651 Brassica rapa Bra015651 N 0.742
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.742
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.742
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.742
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.742
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.742
OBART06G25230 Oryza barthii OBART06G25230 I 0.742
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.740
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.740
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.740
TCM_042067 Theobroma cacao TCM_042067 I 0.732
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.732
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.732
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.732
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.732
MDP0000131481 Malus domestica MDP0000131481 I 0.732
Ca_26121 Cicer arietinum Ca_26121 I 0.732
MDP0000221322 Malus domestica MDP0000221322 I 0.732
Si009541m.g Setaria italica Si009541m.g I 0.732
Si016509m.g Setaria italica Si016509m.g I 0.732
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.732
Ca_02541 Cicer arietinum Ca_02541 I 0.732
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.732
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.732
Si034525m.g Setaria italica Si034525m.g I 0.732
mgf000336m Mimulus guttatus mgf000336m I 0.732
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.732
Pm031275 Prunus mume Pm031275 I 0.732
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.732
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.732
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.732
OB10G20590 Oryza brachyantha OB10G20590 I 0.732
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.732
Bra024109 Brassica rapa Bra024109 I 0.732
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.732
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.732
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.732
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.732
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.732
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.732
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.732
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.732
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.732
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.732
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.729
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.722
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.722
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.722
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.722
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.722
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.722
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.722
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.722
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.722
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.722
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.722
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.722
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.722
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bra011162 Brassica rapa Bra011162 I 0.722
PK17007.1 Cannabis sativa PK17007.1 I 0.722
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.722
Bo1g014600 Brassica oleracea Bo1g014600 I 0.722
ARF16 Arabidopsis thaliana AT4G30080 D 0.722
BGIOSGA014036 Oryza indica BGIOSGA014036 N 0.722
ARF10 Oryza indica BGIOSGA016767 I 0.722
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.722
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.722
mgf005300m Mimulus guttatus mgf005300m I 0.722
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.722
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.722
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.722
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.722
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.722
F775_32978 Aegilops tauschii F775_32978 I 0.722
PK13064.1 Cannabis sativa PK13064.1 I 0.722
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.722
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.722
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N 0.722
Pm018533 Prunus mume Pm018533 I 0.722
Cla018574 Citrullus lanatus Cla018574 I 0.722
Pm030120 Prunus mume Pm030120 I 0.722
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.722
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.722
ARF13 Oryza sativa OS04G0690600 N 0.722
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.722
OMERI04G25770 Oryza meridionalis OMERI04G25770 N 0.722
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.722
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.722
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.722
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.722
OS04G0519700 Oryza sativa OS04G0519700 I 0.722
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N 0.722
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.722
27538.m000327 Ricinus communis 27538.m000327 I 0.722
OBART04G30660 Oryza barthii OBART04G30660 N 0.722
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.722
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.722
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.722
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.722
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.722
OBART04G18910 Oryza barthii OBART04G18910 I 0.722
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.722
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.722
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
Si021833m.g Setaria italica Si021833m.g N 0.711
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.711
TCM_043157 Theobroma cacao TCM_043157 I 0.711
Bo4g071620 Brassica oleracea Bo4g071620 I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.711
TCM_022163 Theobroma cacao TCM_022163 I 0.711
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.711
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.711
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.711
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.711
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.711
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.711
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.711
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.711
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.711
27494.m000045 Ricinus communis 27494.m000045 I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.711
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.711
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.711
Ca_17136 Cicer arietinum Ca_17136 I 0.711
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.708
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.705
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.701
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.701
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.701
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.701
OPUNC04G28180 Oryza punctata OPUNC04G28180 N 0.701
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.701
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.701
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.701
ARF10 Arabidopsis thaliana AT2G28350 I 0.701
Bra011955 Brassica rapa Bra011955 I 0.701
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.701
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.701
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.701
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.701
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.701
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.701