MDP0000256621 (Malus domestica)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 MDP0000256621 T023653_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000256621 B3 224 326

Links

Other B3 family TFs
Other Malus domestica TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.938
Pm019126 Prunus mume Pm019126 I 0.928
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.897
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.897
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.887
MDP0000232116 Malus domestica MDP0000232116 N 0.876
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.876
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.876
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.876
29908.m005953 Ricinus communis 29908.m005953 I 0.866
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.866
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.856
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.856
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.856
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.845
TCM_035002 Theobroma cacao TCM_035002 I 0.845
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.835
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.835
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.825
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.825
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.814
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.814
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.804
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.804
Cla022413 Citrullus lanatus Cla022413 I 0.804
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.784
Bra003665 Brassica rapa Bra003665 N 0.773
ARF17 Arabidopsis thaliana AT1G77850 N 0.773
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.773
Bo6g081980 Brassica oleracea Bo6g081980 N 0.773
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.763
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.753
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.742
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.742
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.742
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.742
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.742
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.742
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.742
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.742
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.732
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.732
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.732
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.732
Bo6g121520 Brassica oleracea Bo6g121520 N 0.732
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.732
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.732
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.732
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.732
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.732
ARF18 Oryza sativa OS06G0685700 I 0.732
ARF22 Oryza sativa OS10G0479900 I 0.732
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.732
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.732
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.732
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.732
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.732
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
OBART06G25230 Oryza barthii OBART06G25230 I 0.732
OBART10G13410 Oryza barthii OBART10G13410 I 0.732
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.732
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.732
OB06G32920 Oryza brachyantha OB06G32920 I 0.732
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.732
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.732
Bra015651 Brassica rapa Bra015651 N 0.732
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.732
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.732
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.732
Si005991m.g Setaria italica Si005991m.g I 0.732
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.732
ARF13 Oryza sativa OS04G0690600 N 0.722
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.722
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.722
TCM_022163 Theobroma cacao TCM_022163 I 0.722
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.722
Si034525m.g Setaria italica Si034525m.g I 0.722
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.722
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.722
30078.m002329 Ricinus communis 30078.m002329 I 0.722
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.722
OMERI04G25770 Oryza meridionalis OMERI04G25770 N 0.722
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.722
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.722
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N 0.722
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.722
OBART04G30660 Oryza barthii OBART04G30660 N 0.722
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.722
OB10G20590 Oryza brachyantha OB10G20590 I 0.722
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.722
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.722
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N 0.722
BGIOSGA014036 Oryza indica BGIOSGA014036 N 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.711
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.711
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.711
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.711
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.711
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.711
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.711
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.711
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.711
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.711
LPERR04G26090 Leersia perrieri LPERR04G26090 N 0.711
mgf000336m Mimulus guttatus mgf000336m I 0.711
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.711
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.711
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.711
Bo1g014600 Brassica oleracea Bo1g014600 I 0.711
Bo7g114200 Brassica oleracea Bo7g114200 I 0.711
Bra011162 Brassica rapa Bra011162 I 0.711
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.711
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.711
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.711
ARF16 Arabidopsis thaliana AT4G30080 D 0.711
PK17007.1 Cannabis sativa PK17007.1 I 0.711
Bra024109 Brassica rapa Bra024109 I 0.711
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.711
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.711
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.711
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.711
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.711
F775_32978 Aegilops tauschii F775_32978 I 0.711
MDP0000221322 Malus domestica MDP0000221322 I 0.711
MDP0000131481 Malus domestica MDP0000131481 I 0.711
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.711
mgf005300m Mimulus guttatus mgf005300m I 0.711
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.711
Si009541m.g Setaria italica Si009541m.g I 0.711
Si021833m.g Setaria italica Si021833m.g N 0.711
Cla008883 Citrullus lanatus Cla008883 I 0.711
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.711
Ca_26121 Cicer arietinum Ca_26121 I 0.711
Cla018574 Citrullus lanatus Cla018574 I 0.711
OB02G32150 Oryza brachyantha OB02G32150 I 0.711
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.711
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.711
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.711
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.711
Pm030120 Prunus mume Pm030120 I 0.711
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.701
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.701
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.701
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.701
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.701
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.701
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.701
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.701
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
ARF10 Oryza indica BGIOSGA016767 I 0.701
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.701
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.701
ARF8 Oryza sativa OS02G0628600 I 0.701
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.701
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.701
OPUNC04G28180 Oryza punctata OPUNC04G28180 N 0.701
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.701
BRADI5G27400 Brachypodium distachyon BRADI5G27400 N 0.701
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.701
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.701
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.701
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.701
Ca_02541 Cicer arietinum Ca_02541 I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.701
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.701
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.701
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.701
mgf016139m Mimulus guttatus mgf016139m I 0.701
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.701
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.701
27538.m000327 Ricinus communis 27538.m000327 I 0.701
Pm031275 Prunus mume Pm031275 I 0.701
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.701
TCM_043157 Theobroma cacao TCM_043157 I 0.701
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.701
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.701
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.701
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.701
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.701
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.701
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.701
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.701
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.701
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.701
TCM_042067 Theobroma cacao TCM_042067 I 0.701
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.701
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.701