Pavir.J03524 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J03524 T023931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03524.1.p B3 118 220
Pavir.J03524.2.p B3 5 75

Links

Other B3 family TFs
Other Panicum virgatum TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.938
Si021833m.g Setaria italica Si021833m.g N 0.857
LPERR04G26090 Leersia perrieri LPERR04G26090 N 0.817
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.808
OPUNC04G28180 Oryza punctata OPUNC04G28180 N 0.804
BGIOSGA014036 Oryza indica BGIOSGA014036 N 0.798
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N 0.798
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N 0.798
OBART04G30660 Oryza barthii OBART04G30660 N 0.798
OMERI04G25770 Oryza meridionalis OMERI04G25770 N 0.798
ARF13 Oryza sativa OS04G0690600 N 0.798
Sb06g033970 Sorghum bicolor Sb06g033970 N 0.796
OB04G37650 Oryza brachyantha OB04G37650 N 0.773
GRMZM5G808366 Zea mays GRMZM5G808366 N 0.765
BRADI5G27400 Brachypodium distachyon BRADI5G27400 N 0.765
Traes_2AL_C70217249 Triticum aestivum Traes_2AL_C70217249 N 0.763
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.753
OLONG_022935 Oryza longistaminata OLONG_022935 N 0.746
ORUFI04G32360 Oryza rufipogon ORUFI04G32360 N 0.746
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.737
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.732
Si034525m.g Setaria italica Si034525m.g I 0.732
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.732
Si005991m.g Setaria italica Si005991m.g I 0.732
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.732
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.732
mgf000336m Mimulus guttatus mgf000336m I 0.732
mgf005300m Mimulus guttatus mgf005300m I 0.732
OBART06G25230 Oryza barthii OBART06G25230 I 0.732
OBART10G13410 Oryza barthii OBART10G13410 I 0.732
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.732
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.732
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.732
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.732
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.732
OB10G20590 Oryza brachyantha OB10G20590 I 0.732
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.732
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.732
ARF22 Oryza sativa OS10G0479900 I 0.732
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.732
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.732
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.732
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.732
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.732
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.732
ARF18 Oryza sativa OS06G0685700 I 0.732
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.732
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.732
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.732
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.732
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.732
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.732
Bra024109 Brassica rapa Bra024109 I 0.732
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.732
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.732
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.732
OB06G32920 Oryza brachyantha OB06G32920 I 0.732
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.732
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.732
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.729
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.729
F775_32978 Aegilops tauschii F775_32978 I 0.729
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.729
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.729
OB02G32150 Oryza brachyantha OB02G32150 I 0.729
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.729
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.729
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bra011162 Brassica rapa Bra011162 I 0.722
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.722
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.722
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.722
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.722
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.722
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.722
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.722
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.722
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.722
ARF16 Arabidopsis thaliana AT4G30080 D 0.722
Pm030120 Prunus mume Pm030120 I 0.722
Pm019126 Prunus mume Pm019126 I 0.722
Bo1g014600 Brassica oleracea Bo1g014600 I 0.722
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.722
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.722
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.722
Pm018533 Prunus mume Pm018533 I 0.722
Cla018574 Citrullus lanatus Cla018574 I 0.722
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.722
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.722
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.722
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.722
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.722
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.722
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.722
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.722
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.722
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.722
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.722
MDP0000256621 Malus domestica MDP0000256621 I 0.722
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.722
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.722
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.722
PK17007.1 Cannabis sativa PK17007.1 I 0.722
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.722
Ca_02541 Cicer arietinum Ca_02541 I 0.719
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.719
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.719
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.719
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.719
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.719
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.719
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.719
ARF8 Oryza sativa OS02G0628600 I 0.719
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.719
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.719
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.719
mgf016139m Mimulus guttatus mgf016139m I 0.719
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.719
Si016509m.g Setaria italica Si016509m.g I 0.719
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.719
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.719
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.719
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.716
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.711
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.711
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.711
MDP0000221322 Malus domestica MDP0000221322 I 0.711
MDP0000131481 Malus domestica MDP0000131481 I 0.711
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.711
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.711
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.711
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.711
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.711
TCM_022163 Theobroma cacao TCM_022163 I 0.711
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.711
TCM_042067 Theobroma cacao TCM_042067 I 0.711
TCM_043157 Theobroma cacao TCM_043157 I 0.711
Ca_17136 Cicer arietinum Ca_17136 I 0.711
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.711
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.711
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.711
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.711
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.711
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.711
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.711
Ca_26121 Cicer arietinum Ca_26121 I 0.711
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.711
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
Pm031275 Prunus mume Pm031275 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.711
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.711
27538.m000327 Ricinus communis 27538.m000327 I 0.711
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.708
Bo4g071620 Brassica oleracea Bo4g071620 I 0.708
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.708
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.708
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.701
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.701
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.701
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.701
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.701
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.701
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.701
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.701
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.701
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.701
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.701
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.701
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.701
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.701
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.701
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.701
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.701
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.701
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.701
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.701
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.701
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.701