AMTR_s00155p00082980 (Amborella trichopoda)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AMTR_s00155p00082980 T018365_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN07701 B3 147 249

Links

Other B3 family TFs
Other Amborella trichopoda TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.938
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.921
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.917
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.917
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.917
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.906
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.897
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.897
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.897
Pm031275 Prunus mume Pm031275 I 0.897
Ca_02541 Cicer arietinum Ca_02541 I 0.896
27538.m000327 Ricinus communis 27538.m000327 I 0.896
OB10G20590 Oryza brachyantha OB10G20590 I 0.896
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.896
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.887
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.887
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
OBART06G25230 Oryza barthii OBART06G25230 I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.887
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.887
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.887
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.887
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
MDP0000131481 Malus domestica MDP0000131481 I 0.887
MDP0000221322 Malus domestica MDP0000221322 I 0.887
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.887
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.887
TCM_042067 Theobroma cacao TCM_042067 I 0.887
Si034525m.g Setaria italica Si034525m.g I 0.887
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
OB06G32920 Oryza brachyantha OB06G32920 I 0.887
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.887
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.887
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.887
ARF18 Oryza sativa OS06G0685700 I 0.887
Si005991m.g Setaria italica Si005991m.g I 0.887
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.887
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.887
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.887
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
F775_32978 Aegilops tauschii F775_32978 I 0.885
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.885
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.885
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.876
Cla018574 Citrullus lanatus Cla018574 I 0.876
Pm030120 Prunus mume Pm030120 I 0.876
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.876
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.876
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.876
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.876
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.876
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.876
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.876
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.876
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.876
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.876
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.876
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.876
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.876
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.875
Si016509m.g Setaria italica Si016509m.g I 0.875
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.875
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.875
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.875
OB02G32150 Oryza brachyantha OB02G32150 I 0.875
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.875
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.875
mgf016139m Mimulus guttatus mgf016139m I 0.875
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.866
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.866
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.866
PK17007.1 Cannabis sativa PK17007.1 I 0.866
mgf005300m Mimulus guttatus mgf005300m I 0.866
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.866
Cla013979 Citrullus lanatus Cla013979 I 0.866
TCM_022163 Theobroma cacao TCM_022163 I 0.866
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.866
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.866
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.866
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.866
30078.m002329 Ricinus communis 30078.m002329 I 0.866
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.866
Ca_26121 Cicer arietinum Ca_26121 I 0.866
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.866
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.866
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.865
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.865
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.865
Bo4g071620 Brassica oleracea Bo4g071620 I 0.865
TCM_043157 Theobroma cacao TCM_043157 I 0.865
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.865
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.865
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.865
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.865
ARF10 Arabidopsis thaliana AT2G28350 I 0.865
ARF8 Oryza sativa OS02G0628600 I 0.865
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.865
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.865
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.865
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.865
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.865
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.863
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.856
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.856
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.856
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.856
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.856
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.856
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.856
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.856
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.856
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.856
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.856
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.856
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.856
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.854
Bra011955 Brassica rapa Bra011955 I 0.854
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.854
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.854
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.854
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.854
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.854
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.854
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.854
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.854
Bra011162 Brassica rapa Bra011162 I 0.845
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.845
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.845
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.845
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.845
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.845
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.845
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.845
MDP0000750392 Malus domestica MDP0000750392 I 0.845
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.845
ARF16 Arabidopsis thaliana AT4G30080 D 0.845
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.845
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.845
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.845
Cla008883 Citrullus lanatus Cla008883 I 0.845
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.845
27494.m000045 Ricinus communis 27494.m000045 I 0.844
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.844
Bo7g114200 Brassica oleracea Bo7g114200 I 0.844
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.837
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.835
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.835
PK13064.1 Cannabis sativa PK13064.1 I 0.835
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.835
Bo1g014600 Brassica oleracea Bo1g014600 I 0.835
Pm018533 Prunus mume Pm018533 I 0.835
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.835
mgf024607m Mimulus guttatus mgf024607m I 0.835
Ca_17136 Cicer arietinum Ca_17136 I 0.835
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.835
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.833
mgf000336m Mimulus guttatus mgf000336m I 0.833
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.833
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.825
Bra024109 Brassica rapa Bra024109 I 0.825
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.825
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.823
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.823
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.814
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.814
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.792
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.792
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.792
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.784
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.783
Ca_08488 Cicer arietinum Ca_08488 I 0.780
ARF10 Oryza indica BGIOSGA016767 I 0.771
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.771
OS04G0519700 Oryza sativa OS04G0519700 I 0.771
OBART04G18910 Oryza barthii OBART04G18910 I 0.771
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.771
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.771
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.771
PK13393.1 Cannabis sativa PK13393.1 I 0.765
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.763
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.755
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.755
Si009541m.g Setaria italica Si009541m.g I 0.753
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.742
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.729
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.729
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.728
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.722
Pm019126 Prunus mume Pm019126 I 0.711
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.708
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.708
PK10136.1 Cannabis sativa PK10136.1 I 0.708
OB04G25990 Oryza brachyantha OB04G25990 I 0.708
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.708
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.708
OBART02G24860 Oryza barthii OBART02G24860 I 0.707
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.701
TCM_035002 Theobroma cacao TCM_035002 I 0.701
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.700