LjSGA_045968.2 (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 LjSGA_045968.2 T024430_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_045968.2 B3 123 203

Links

Other B3 family TFs
Other Lotus japonicus TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.884
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.884
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.870
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.841
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.826
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.826
27494.m000045 Ricinus communis 27494.m000045 I 0.826
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.826
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.826
ARF10 Arabidopsis thaliana AT2G28350 I 0.826
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.826
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.826
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.812
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.812
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.812
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.812
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.812
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.812
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.812
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.812
mgf024607m Mimulus guttatus mgf024607m I 0.812
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.812
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.812
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.812
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.812
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.812
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.812
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.812
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.812
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.812
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.812
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.812
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.812
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.812
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.812
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.812
Pm030120 Prunus mume Pm030120 I 0.812
Bra011955 Brassica rapa Bra011955 I 0.812
Cla018574 Citrullus lanatus Cla018574 I 0.812
Cla013979 Citrullus lanatus Cla013979 I 0.812
Ca_26121 Cicer arietinum Ca_26121 I 0.812
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.812
Bra011162 Brassica rapa Bra011162 I 0.812
Bo7g114200 Brassica oleracea Bo7g114200 I 0.812
Pm031275 Prunus mume Pm031275 I 0.812
ARF16 Arabidopsis thaliana AT4G30080 D 0.812
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.812
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.812
Bo4g071620 Brassica oleracea Bo4g071620 I 0.812
TCM_022163 Theobroma cacao TCM_022163 I 0.812
30078.m002329 Ricinus communis 30078.m002329 I 0.812
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.812
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.812
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.812
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.812
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.812
TCM_043157 Theobroma cacao TCM_043157 I 0.812
mgf005300m Mimulus guttatus mgf005300m I 0.797
TCM_042067 Theobroma cacao TCM_042067 I 0.797
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.797
Si005991m.g Setaria italica Si005991m.g I 0.797
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.797
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.797
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.797
Cla008883 Citrullus lanatus Cla008883 I 0.797
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.797
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.797
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.797
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.797
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.797
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.797
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.797
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.797
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.797
OB06G32920 Oryza brachyantha OB06G32920 I 0.797
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.797
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.797
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.797
PK17007.1 Cannabis sativa PK17007.1 I 0.797
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.797
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.797
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.797
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.797
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.797
ARF18 Oryza sativa OS06G0685700 I 0.797
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.797
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.797
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.797
27538.m000327 Ricinus communis 27538.m000327 I 0.797
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.797
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.797
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.797
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.797
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.797
OBART06G25230 Oryza barthii OBART06G25230 I 0.797
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.797
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.797
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.783
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.783
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.783
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.783
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.783
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.783
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.783
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.783
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.783
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.783
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.783
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.783
OBART10G13410 Oryza barthii OBART10G13410 I 0.783
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.783
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.783
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.783
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.783
OB10G20590 Oryza brachyantha OB10G20590 I 0.783
ARF22 Oryza sativa OS10G0479900 I 0.783
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.783
Si034525m.g Setaria italica Si034525m.g I 0.783
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.783
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.783
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.783
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.783
Si016509m.g Setaria italica Si016509m.g I 0.783
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.783
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.783
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.783
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.783
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.768
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.768
F775_32978 Aegilops tauschii F775_32978 I 0.768
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.768
MDP0000237202 Malus domestica MDP0000237202 I 0.768
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.768
OB02G32150 Oryza brachyantha OB02G32150 I 0.768
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.768
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.768
ARF8 Oryza sativa OS02G0628600 I 0.768
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.768
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.768
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.768
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.768
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.768
Ca_17136 Cicer arietinum Ca_17136 I 0.768
ARF10 Oryza indica BGIOSGA016767 I 0.754
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.754
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.754
OS04G0519700 Oryza sativa OS04G0519700 I 0.754
OBART04G18910 Oryza barthii OBART04G18910 I 0.754
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.754
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.754
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.754
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.754
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.739
Si009541m.g Setaria italica Si009541m.g I 0.725
OB04G25990 Oryza brachyantha OB04G25990 I 0.725
mgf000336m Mimulus guttatus mgf000336m I 0.725
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.725
PK13393.1 Cannabis sativa PK13393.1 I 0.710
Ca_08488 Cicer arietinum Ca_08488 I 0.710