30078.m002329 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 30078.m002329 T022196_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30078.m002329 B3 124 226

Links

Other B3 family TFs
Other Ricinus communis TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 1.000
TCM_022163 Theobroma cacao TCM_022163 I 1.000
Pm030120 Prunus mume Pm030120 I 0.990
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.990
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.990
Cla018574 Citrullus lanatus Cla018574 I 0.990
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.990
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.990
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.990
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.990
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.990
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.990
PK17007.1 Cannabis sativa PK17007.1 I 0.979
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.979
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.969
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.969
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.969
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.969
mgf005300m Mimulus guttatus mgf005300m I 0.969
MDP0000750392 Malus domestica MDP0000750392 I 0.959
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.959
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.959
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.959
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.948
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.948
MDP0000131481 Malus domestica MDP0000131481 I 0.948
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.948
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.948
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.948
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.948
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.948
Pm031275 Prunus mume Pm031275 I 0.948
Ca_17136 Cicer arietinum Ca_17136 I 0.948
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.948
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.948
MDP0000221322 Malus domestica MDP0000221322 I 0.948
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.948
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.948
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.938
TCM_042067 Theobroma cacao TCM_042067 I 0.938
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.938
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.938
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.938
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.938
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.938
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.938
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.938
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.938
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.938
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.928
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.928
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.928
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.928
TCM_043157 Theobroma cacao TCM_043157 I 0.928
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.928
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.928
Si005991m.g Setaria italica Si005991m.g I 0.928
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.928
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.928
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.928
ARF18 Oryza sativa OS06G0685700 I 0.928
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.928
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.928
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.928
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.928
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.928
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.928
Cla013979 Citrullus lanatus Cla013979 I 0.928
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.928
mgf024607m Mimulus guttatus mgf024607m I 0.928
OB06G32920 Oryza brachyantha OB06G32920 I 0.928
Bra011162 Brassica rapa Bra011162 I 0.928
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.928
OBART06G25230 Oryza barthii OBART06G25230 I 0.928
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.928
Pm018533 Prunus mume Pm018533 I 0.928
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.918
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.918
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.918
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.918
ARF16 Arabidopsis thaliana AT4G30080 D 0.918
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.918
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.918
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.918
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.918
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.918
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.918
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.918
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.918
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.918
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.918
Bo1g014600 Brassica oleracea Bo1g014600 I 0.918
Si034525m.g Setaria italica Si034525m.g I 0.918
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.918
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.918
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.918
mgf016139m Mimulus guttatus mgf016139m I 0.917
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.907
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.907
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.907
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.907
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.907
Ca_26121 Cicer arietinum Ca_26121 I 0.907
OB10G20590 Oryza brachyantha OB10G20590 I 0.907
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.907
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.907
F775_32978 Aegilops tauschii F775_32978 I 0.907
Bo7g114200 Brassica oleracea Bo7g114200 I 0.907
Ca_02541 Cicer arietinum Ca_02541 I 0.906
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.906
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.897
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.897
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.897
Bra024109 Brassica rapa Bra024109 I 0.897
OBART10G13410 Oryza barthii OBART10G13410 I 0.897
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.897
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.897
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.897
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.897
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.897
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.897
ARF22 Oryza sativa OS10G0479900 I 0.897
ARF10 Arabidopsis thaliana AT2G28350 I 0.897
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.897
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.897
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.897
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.897
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.896
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.895
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.887
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.887
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.887
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.887
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.887
Bra011955 Brassica rapa Bra011955 I 0.887
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.887
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.887
27494.m000045 Ricinus communis 27494.m000045 I 0.887
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
Bo4g071620 Brassica oleracea Bo4g071620 I 0.876
PK13064.1 Cannabis sativa PK13064.1 I 0.876
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.876
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.876
mgf000336m Mimulus guttatus mgf000336m I 0.876
Si016509m.g Setaria italica Si016509m.g I 0.876
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.866
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.866
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.866
ARF8 Oryza sativa OS02G0628600 I 0.866
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.866
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.866
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.866
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.866
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.866
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.866
Cla008883 Citrullus lanatus Cla008883 I 0.866
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.866
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.866
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.866
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.866
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.866
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.866
OB02G32150 Oryza brachyantha OB02G32150 I 0.865
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.856
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.856
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.845
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.845
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.845
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.845
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.814
Ca_08488 Cicer arietinum Ca_08488 I 0.814
PK13393.1 Cannabis sativa PK13393.1 I 0.814
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.804
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.804
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.802
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.802
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.794
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.784
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
OBART04G18910 Oryza barthii OBART04G18910 I 0.784
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.784
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.784
OS04G0519700 Oryza sativa OS04G0519700 I 0.784
ARF10 Oryza indica BGIOSGA016767 I 0.784
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.784
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.784
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
Si009541m.g Setaria italica Si009541m.g I 0.763
Ca_17624 Cicer arietinum Ca_17624 I 0.763
OB04G25990 Oryza brachyantha OB04G25990 I 0.763
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.753
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.753
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.742
29908.m005953 Ricinus communis 29908.m005953 I 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.722
TCM_035002 Theobroma cacao TCM_035002 I 0.722
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.722
Cla022413 Citrullus lanatus Cla022413 I 0.722
MDP0000256621 Malus domestica MDP0000256621 I 0.722
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.722
OBART02G24860 Oryza barthii OBART02G24860 I 0.720
TCM_029792 Theobroma cacao TCM_029792 I 0.717
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
PK10136.1 Cannabis sativa PK10136.1 I 0.711
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.711
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
Pm019126 Prunus mume Pm019126 I 0.711
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.701
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.701