Bo3g062160 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo3g062160 T267254_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.801 0.796
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.793 0.806
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.679 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g062160.1 Myb 14 60
Bo3g062160.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra001323 Brassica rapa Bra001323 I 0.864
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.835
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.814
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.814
PK07741.1 Cannabis sativa PK07741.1 D 0.801
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.796
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.796
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.796
MYB1 Arabidopsis thaliana AT3G09230 D 0.793
Bra034057 Brassica rapa Bra034057 I 0.792
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.782
TCM_042629 Theobroma cacao TCM_042629 I 0.782
Pm018862 Prunus mume Pm018862 I 0.782
Bo1g144680 Brassica oleracea Bo1g144680 I 0.781
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.775
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.773
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.773
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.762
Si001686m.g Setaria italica Si001686m.g I 0.762
Bo7g117880 Brassica oleracea Bo7g117880 I 0.762
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.760
MDP0000284922 Malus domestica MDP0000284922 I 0.753
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.752
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.752
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.751
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.751
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.749
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.749
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.748
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.747
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.745
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.745
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.743
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.739
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.736
MDP0000807341 Malus domestica MDP0000807341 I 0.736
Bra007186 Brassica rapa Bra007186 I 0.735
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.734
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.731
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.729
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.729
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.729
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.729
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.727
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.727
Bo8g090160 Brassica oleracea Bo8g090160 I 0.726
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.726
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.726
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.725
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.725
TCM_021796 Theobroma cacao TCM_021796 I 0.722
MDP0000478512 Malus domestica MDP0000478512 I 0.722
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.721
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.721
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.721
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.721
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.721
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.717
Pm002576 Prunus mume Pm002576 I 0.713
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.713
PK12959.1 Cannabis sativa PK12959.1 I 0.711
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.711
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.709
mgf018580m Mimulus guttatus mgf018580m I 0.708
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.705
mgf015566m Mimulus guttatus mgf015566m I 0.705
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.704
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.704
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.701
27798.m000612 Ricinus communis 27798.m000612 I 0.701
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.701
OBART01G37390 Oryza barthii OBART01G37390 I 0.701
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.701
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.701
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.701
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.701
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.701
Cla018417 Citrullus lanatus Cla018417 I 0.701
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.701
OS01G0850400 Oryza sativa OS01G0850400 I 0.701
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.701
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.701
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.701
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.696
MDP0000319124 Malus domestica MDP0000319124 I 0.695
MDP0000203733 Malus domestica MDP0000203733 I 0.695
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.695
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.693
Bra005006 Brassica rapa Bra005006 I 0.692
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.691
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.691
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.690
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.689
Bo4g025810 Brassica oleracea Bo4g025810 I 0.687
MYB109 Arabidopsis thaliana AT3G55730 I 0.685
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.685
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.684
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.684
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.682
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.681
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.681
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.680
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.679
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.679
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.679
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.679
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.679
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.679
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.679
OS02G0187700 Oryza sativa OS02G0187700 D 0.679
Si017917m.g Setaria italica Si017917m.g I 0.679
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.679
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.679
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.679
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.679
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.679
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.676
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.676
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.676
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.676
TRIUR3_08319 Triticum urartu TRIUR3_08319 I 0.675
mgf025567m Mimulus guttatus mgf025567m I 0.673
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.672
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.672
mgf006151m Mimulus guttatus mgf006151m I 0.672
OB01G46120 Oryza brachyantha OB01G46120 I 0.671
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.671
PK16550.1 Cannabis sativa PK16550.1 I 0.669
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.667
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.666
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.666
Cla021015 Citrullus lanatus Cla021015 I 0.664
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.663
Si032789m.g Setaria italica Si032789m.g I 0.661
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.661
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.661
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.661