AtMYB1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_301043.1 T279377_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.819 0.914
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.805 0.860
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.722 0.742
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.688 0.763
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.688 0.763
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.688 0.763
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.683 0.742
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.668 0.710
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.668 0.710
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.668 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301043.1 Myb 52 98
scaffold_301043.1 Myb 104 149

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.870
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.831
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.831
MYB1 Arabidopsis thaliana AT3G09230 D 0.819
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.817
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.817
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.816
PK07741.1 Cannabis sativa PK07741.1 D 0.805
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.804
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.804
Bo3g062160 Brassica oleracea Bo3g062160 I 0.796
TCM_042629 Theobroma cacao TCM_042629 I 0.795
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.795
Pm018862 Prunus mume Pm018862 I 0.794
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.788
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.788
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.788
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.785
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.781
Si001686m.g Setaria italica Si001686m.g I 0.775
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.772
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.772
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.772
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.772
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.770
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.770
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.768
MDP0000284922 Malus domestica MDP0000284922 I 0.765
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.764
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.763
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.763
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.762
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.760
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.760
Pm002576 Prunus mume Pm002576 I 0.756
TCM_021796 Theobroma cacao TCM_021796 I 0.756
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.756
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.756
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.753
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.753
Bra001323 Brassica rapa Bra001323 I 0.752
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.751
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.750
MDP0000807341 Malus domestica MDP0000807341 I 0.748
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.747
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.747
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.746
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.746
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.746
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.746
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.744
Cla018417 Citrullus lanatus Cla018417 I 0.744
27798.m000612 Ricinus communis 27798.m000612 I 0.744
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.744
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.743
MDP0000319124 Malus domestica MDP0000319124 I 0.738
MDP0000203733 Malus domestica MDP0000203733 I 0.738
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.737
MDP0000478512 Malus domestica MDP0000478512 I 0.735
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.733
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.733
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.733
mgf015566m Mimulus guttatus mgf015566m I 0.731
Bra007186 Brassica rapa Bra007186 I 0.730
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.727
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.724
Bra034057 Brassica rapa Bra034057 I 0.724
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.724
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.724
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.724
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.724
PK12959.1 Cannabis sativa PK12959.1 I 0.724
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.723
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.722
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.722
OS02G0187700 Oryza sativa OS02G0187700 D 0.722
Si017917m.g Setaria italica Si017917m.g I 0.722
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.722
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.722
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.722
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.722
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.722
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.722
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.722
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.722
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.722
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.722
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.722
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.721
mgf018580m Mimulus guttatus mgf018580m I 0.721
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.721
Bo8g090160 Brassica oleracea Bo8g090160 I 0.721
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.720
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.717
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.717
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.714
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.713
Bo1g144680 Brassica oleracea Bo1g144680 I 0.713
PK16550.1 Cannabis sativa PK16550.1 I 0.712
MYB109 Arabidopsis thaliana AT3G55730 I 0.710
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.708
Bra005006 Brassica rapa Bra005006 I 0.704
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.704
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.704
Si032789m.g Setaria italica Si032789m.g I 0.704
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.704
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.703
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.703
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.703
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.702
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.702
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.702
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.701
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.701
OB09G10200 Oryza brachyantha OB09G10200 I 0.700
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.700
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.700
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.700
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.700
OBART09G00310 Oryza barthii OBART09G00310 I 0.700
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.700
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.700
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.700
OS09G0106700 Oryza sativa OS09G0106700 I 0.700
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.700
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.700
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.700
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.700
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.699
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.699
Bo4g025810 Brassica oleracea Bo4g025810 I 0.699
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.698
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.697
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.696
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.696
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.696
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.696
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.696
OBART01G37390 Oryza barthii OBART01G37390 I 0.696
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.696
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.696
OB01G46120 Oryza brachyantha OB01G46120 I 0.696
OS01G0850400 Oryza sativa OS01G0850400 I 0.696
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.696
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.696
Cla013306 Citrullus lanatus Cla013306 I 0.695
Pm021211 Prunus mume Pm021211 I 0.695
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.695
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.694
Bo7g117880 Brassica oleracea Bo7g117880 I 0.694
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.693
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.693
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.693
29801.m003096 Ricinus communis 29801.m003096 I 0.693
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.691
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.691
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.688
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.688
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.688
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.688
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.688
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.688
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.688
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.688
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.688
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.688
PK28565.1 Cannabis sativa PK28565.1 D 0.688
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.688
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.688
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.688
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.688
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.688
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.688
TCM_000696 Theobroma cacao TCM_000696 I 0.688
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.688
Si006938m.g Setaria italica Si006938m.g I 0.688
MDP0000232454 Malus domestica MDP0000232454 I 0.688
MDP0000196986 Malus domestica MDP0000196986 I 0.688
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.688
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.688
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.688
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.688
29970.m000987 Ricinus communis 29970.m000987 I 0.688
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.688
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.688
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.688
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.688
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.686
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.685
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.685
Ca_02182 Cicer arietinum Ca_02182 I 0.685
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.685
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.685
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.685
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.685
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.684
mgf002573m Mimulus guttatus mgf002573m I 0.684
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.684
Bra011749 Brassica rapa Bra011749 I 0.683
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.683
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.683
MYB73 Arabidopsis thaliana AT4G37260 D 0.683
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.683
Bo1g004900 Brassica oleracea Bo1g004900 I 0.683
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.683
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.683
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.683
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.683
Cla022947 Citrullus lanatus Cla022947 I 0.683
Bra010593 Brassica rapa Bra010593 I 0.683
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.683
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.683
mgf025567m Mimulus guttatus mgf025567m I 0.682
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.681
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.680
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.680
Bo3g153550 Brassica oleracea Bo3g153550 I 0.680
mgf006151m Mimulus guttatus mgf006151m I 0.680
mgf023922m Mimulus guttatus mgf023922m I 0.680
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.679
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.679
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.677
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.677
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.677
estExt_fgenesh4_pg.C_10375 Volvox carteri estExt_fgenesh4_pg.C_10375 I 0.677
Cla006872 Citrullus lanatus Cla006872 I 0.677
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.676
mgf014089m Mimulus guttatus mgf014089m I 0.676
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.675
MDP0000187872 Malus domestica MDP0000187872 I 0.674
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.673
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.673
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.672
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.672
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.672
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.670
Cla014191 Citrullus lanatus Cla014191 I 0.670
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.669
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.669
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.668
Bo2g167960 Brassica oleracea Bo2g167960 I 0.668
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.668
Bra012149 Brassica rapa Bra012149 I 0.668
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.668
MYB44 Arabidopsis thaliana AT5G67300 D 0.668
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.668
Bo7g063830 Brassica oleracea Bo7g063830 I 0.668
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.668
Pm018951 Prunus mume Pm018951 I 0.666
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.666
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.665
TCM_033907 Theobroma cacao TCM_033907 I 0.664
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.664
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.664
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.663
Cla021015 Citrullus lanatus Cla021015 I 0.662
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.662
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.662
Bo7g118450 Brassica oleracea Bo7g118450 I 0.662