CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea03398
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ea03398
T289140_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.801
0.860
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.721
0.785
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.698
0.753
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.671
0.720
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.671
0.720
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.671
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea03398.1.p
Myb
60
106
RGPWSPEEDAVLSDLVEKLGARNWTLIARGIPGRSGKSCRLRWCNQL
Pavir.Ea03398.1.p
Myb
112
157
RKPFTEEEDRIIMVAHAVHGNKWACIAKLLDGRTDNAIKNHWNSTL
Pavir.Ea03398.2.p
Myb
60
106
RGPWSPEEDAVLSDLVEKLGARNWTLIARGIPGRSGKSCRLRWCNQL
Pavir.Ea03398.2.p
Myb
112
157
RKPFTEEEDRIIMVAHAVHGNKWACIAKLLDGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
220 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G169316
Zea mays
GRMZM2G169316
I
0.909
Pavir.J13677
Panicum virgatum
Pavir.J13677
I
0.909
Sb03g039950
Sorghum bicolor
Sb03g039950
I
0.900
Si001686m.g
Setaria italica
Si001686m.g
I
0.867
Pm018862
Prunus mume
Pm018862
I
0.836
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.836
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.825
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.825
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.822
TCM_042629
Theobroma cacao
TCM_042629
I
0.822
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.820
MDP0000284922
Malus domestica
MDP0000284922
I
0.816
Solyc05g052850.2
Solanum lycopersicum
Solyc05g052850.2
I
0.816
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.815
mgf015566m
Mimulus guttatus
mgf015566m
I
0.812
Ciclev10012003m.g
Citrus clementina
Ciclev10012003m.g
I
0.811
orange1.1g017566m.g
Citrus sinensis
orange1.1g017566m.g
I
0.811
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.810
Ciclev10031463m.g
Citrus clementina
Ciclev10031463m.g
I
0.809
orange1.1g012494m.g
Citrus sinensis
orange1.1g012494m.g
I
0.809
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.806
27798.m000612
Ricinus communis
27798.m000612
I
0.803
Cla018417
Citrullus lanatus
Cla018417
I
0.803
Cucsa.066910
Cucumis sativus
Cucsa.066910
I
0.803
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.801
PK07741.1
Cannabis sativa
PK07741.1
D
0.801
MDP0000807341
Malus domestica
MDP0000807341
I
0.800
SapurV1A.0262s0270
Salix purpurea
SapurV1A.0262s0270
I
0.798
MYB109
Arabidopsis lyrata
fgenesh2_kg.5__1999__AT3G55730.1
I
0.798
GSMUA_Achr9G03720_001
Musa acuminata
GSMUA_Achr9G03720_001
I
0.796
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.793
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.792
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.789
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.789
OB01G46120
Oryza brachyantha
OB01G46120
I
0.783
PGSC0003DMG400027190
Solanum tuberosum
PGSC0003DMG400027190
I
0.782
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.781
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.779
Gorai.006G179700
Gossypium raimondii
Gorai.006G179700
I
0.779
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.774
MDP0000203733
Malus domestica
MDP0000203733
I
0.773
MDP0000319124
Malus domestica
MDP0000319124
I
0.773
VIT_08s0007g01540
Vitis vinifera
VIT_08s0007g01540
I
0.773
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.772
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.772
Carubv10017397m.g
Capsella rubella
Carubv10017397m.g
I
0.768
Cagra.0003s0013
Capsella grandiflora
Cagra.0003s0013
I
0.768
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.766
PK12959.1
Cannabis sativa
PK12959.1
I
0.764
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.763
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.763
MYB109
Arabidopsis thaliana
AT3G55730
I
0.763
TCM_021796
Theobroma cacao
TCM_021796
I
0.761
cassava7558.valid.m1
Manihot esculenta
cassava7558.valid.m1
I
0.757
VIT_13s0019g03200
Vitis vinifera
VIT_13s0019g03200
I
0.757
SELMODRAFT_77255
Selaginella moellendorffii
SELMODRAFT_77255
I
0.756
SELMODRAFT_113522
Selaginella moellendorffii
SELMODRAFT_113522
I
0.756
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.755
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.753
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.753
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.753
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.753
OS01G0850400
Oryza sativa
OS01G0850400
I
0.753
OBART01G37390
Oryza barthii
OBART01G37390
I
0.753
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.753
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.753
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.753
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.750
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.749
GLYMA02G42030
Glycine max
GLYMA02G42030
I
0.747
Bra005006
Brassica rapa
Bra005006
I
0.747
BRADI2G55040
Brachypodium distachyon
BRADI2G55040
I
0.747
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.745
MTR_4g019370
Medicago truncatula
MTR_4g019370
I
0.743
Bo4g025810
Brassica oleracea
Bo4g025810
I
0.742
MDP0000478512
Malus domestica
MDP0000478512
I
0.740
Pm002576
Prunus mume
Pm002576
I
0.740
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.738
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.737
gene20888-v1.0-hybrid
Fragaria vesca
gene20888-v1.0-hybrid
I
0.736
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.734
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.734
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.733
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.733
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.731
PRUPE_ppa006851mg
Prunus persica
PRUPE_ppa006851mg
I
0.731
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.729
gene18756-v1.0-hybrid
Fragaria vesca
gene18756-v1.0-hybrid
I
0.729
Bo3g062160
Brassica oleracea
Bo3g062160
I
0.729
mgf018580m
Mimulus guttatus
mgf018580m
I
0.726
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.724
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.724
Bra007186
Brassica rapa
Bra007186
I
0.723
MYB1
Arabidopsis thaliana
AT3G09230
D
0.721
29801.m003096
Ricinus communis
29801.m003096
I
0.720
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.720
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.719
Bostr.22252s0145
Boechera stricta
Bostr.22252s0145
I
0.718
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.717
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.717
POPTR_0009s09890
Populus trichocarpa
POPTR_0009s09890
I
0.714
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.714
PK16550.1
Cannabis sativa
PK16550.1
I
0.713
SapurV1A.0708s0130
Salix purpurea
SapurV1A.0708s0130
I
0.710
MTR_5g082910
Medicago truncatula
MTR_5g082910
I
0.706
gene26289-v1.0-hybrid
Fragaria vesca
gene26289-v1.0-hybrid
I
0.705
Pavir.J23512
Panicum virgatum
Pavir.J23512
I
0.698
BRADI3G06470
Brachypodium distachyon
BRADI3G06470
I
0.698
GRMZM2G145444
Zea mays
GRMZM2G145444
I
0.698
OGLUM02G06640
Oryza glumaepatula
OGLUM02G06640
I
0.698
ORUFI02G06760
Oryza rufipogon
ORUFI02G06760
I
0.698
ORGLA02G0061500
Oryza glaberrima
ORGLA02G0061500
I
0.698
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.698
OMERI02G07700
Oryza meridionalis
OMERI02G07700
I
0.698
OPUNC02G05820
Oryza punctata
OPUNC02G05820
I
0.698
Si017917m.g
Setaria italica
Si017917m.g
I
0.698
OS02G0187700
Oryza sativa
OS02G0187700
D
0.698
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.698
Pavir.Ab00649
Panicum virgatum
Pavir.Ab00649
I
0.698
MLOC_7426
Hordeum vulgare
MLOC_7426
I
0.698
ONIVA02G08210
Oryza nivara
ONIVA02G08210
I
0.698
Sb04g005940
Sorghum bicolor
Sb04g005940
I
0.698
LPERR02G05810
Leersia perrieri
LPERR02G05810
I
0.698
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.694
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.693
Gorai.010G016800
Gossypium raimondii
Gorai.010G016800
I
0.693
Pm021211
Prunus mume
Pm021211
I
0.693
Si032789m.g
Setaria italica
Si032789m.g
I
0.693
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.693
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.693
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.693
PRUPE_ppa023154mg
Prunus persica
PRUPE_ppa023154mg
I
0.693
Ciclev10032317m.g
Citrus clementina
Ciclev10032317m.g
I
0.692
orange1.1g046570m.g
Citrus sinensis
orange1.1g046570m.g
I
0.692
evm.TU.supercontig_56.79
Carica papaya
evm.TU.supercontig_56.79
I
0.691
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.689
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.689
OS09G0106700
Oryza sativa
OS09G0106700
I
0.689
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.689
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.689
OBART09G00310
Oryza barthii
OBART09G00310
I
0.689
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.689
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.689
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.689
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.689
OB09G10200
Oryza brachyantha
OB09G10200
I
0.689
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.689
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.689
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.689
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.689
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.689
GRMZM2G087955
Zea mays
GRMZM2G087955
I
0.688
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.687
GLYMA14G06320
Glycine max
GLYMA14G06320
I
0.686
Eucgr.E02958
Eucalyptus grandis
Eucgr.E02958
I
0.685
Bra001323
Brassica rapa
Bra001323
I
0.685
e_gw1.9.342.1
Physcomitrella patens
e_gw1.9.342.1
I
0.683
Gorai.012G149000
Gossypium raimondii
Gorai.012G149000
I
0.683
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.683
MYB25
Arabidopsis thaliana
AT2G39880
I
0.682
Traes_7DL_1FA87027B
Triticum aestivum
Traes_7DL_1FA87027B
I
0.681
TRIUR3_25447
Triticum urartu
TRIUR3_25447
I
0.681
GRMZM2G078820
Zea mays
GRMZM2G078820
I
0.681
MLOC_63964
Hordeum vulgare
MLOC_63964
I
0.681
MLOC_64963
Hordeum vulgare
MLOC_64963
I
0.681
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.678
GRMZM5G803308
Zea mays
GRMZM5G803308
I
0.677
BGIOSGA020819
Oryza indica
BGIOSGA020819
I
0.677
Pavir.Da00404
Panicum virgatum
Pavir.Da00404
I
0.677
MTR_6g015455
Medicago truncatula
MTR_6g015455
I
0.677
OGLUM06G23260
Oryza glumaepatula
OGLUM06G23260
I
0.677
Si006938m.g
Setaria italica
Si006938m.g
I
0.677
OPUNC06G19910
Oryza punctata
OPUNC06G19910
I
0.677
LPERR06G18380
Leersia perrieri
LPERR06G18380
I
0.677
Pavir.Db00693
Panicum virgatum
Pavir.Db00693
I
0.677
ORUFI06G23790
Oryza rufipogon
ORUFI06G23790
I
0.677
ORGLA06G0184100
Oryza glaberrima
ORGLA06G0184100
I
0.677
Sb10g024950
Sorghum bicolor
Sb10g024950
I
0.677
ONIVA06G26080
Oryza nivara
ONIVA06G26080
I
0.677
Cla013306
Citrullus lanatus
Cla013306
I
0.677
OS06G0637500
Oryza sativa
OS06G0637500
I
0.677
29814.m000736
Ricinus communis
29814.m000736
I
0.677
OMERI06G22090
Oryza meridionalis
OMERI06G22090
I
0.677
TRIUR3_08319
Triticum urartu
TRIUR3_08319
I
0.674
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.674
MDP0000187872
Malus domestica
MDP0000187872
I
0.672
Bra012149
Brassica rapa
Bra012149
I
0.671
Cagra.0342s0017
Capsella grandiflora
Cagra.0342s0017
I
0.671
Bostr.0568s0154
Boechera stricta
Bostr.0568s0154
I
0.671
ATMYBR1
Arabidopsis lyrata
scaffold_803378.1
I
0.671
Carubv10027659m.g
Capsella rubella
Carubv10027659m.g
I
0.671
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.671
Bo7g063830
Brassica oleracea
Bo7g063830
I
0.671
MYB44
Arabidopsis thaliana
AT5G67300
D
0.671
POPTR_0001s30750
Populus trichocarpa
POPTR_0001s30750
I
0.671
Bo2g167960
Brassica oleracea
Bo2g167960
I
0.671
Thhalv10004676m.g
Eutrema salsugineum
Thhalv10004676m.g
I
0.671
mgf025567m
Mimulus guttatus
mgf025567m
I
0.671
Lus10014103.g
Linum usitatissimum
Lus10014103.g
I
0.670
Cla004431
Citrullus lanatus
Cla004431
I
0.670
estExt_fgenesh4_pg.C_10375
Volvox carteri
estExt_fgenesh4_pg.C_10375
I
0.669
mgf020432m
Mimulus guttatus
mgf020432m
I
0.669
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.669
Aquca_007_00580
Aquilegia coerulea
Aquca_007_00580
I
0.669
Gorai.002G009300
Gossypium raimondii
Gorai.002G009300
I
0.669
VIT_13s0067g01360
Vitis vinifera
VIT_13s0067g01360
I
0.668
Gorai.012G078200
Gossypium raimondii
Gorai.012G078200
I
0.668
Cucsa.244650
Cucumis sativus
Cucsa.244650
I
0.668
GLYMA02G43280
Glycine max
GLYMA02G43280
I
0.667
Ca_12468
Cicer arietinum
Ca_12468
I
0.666
Bra034057
Brassica rapa
Bra034057
I
0.666
MDP0000298689
Malus domestica
MDP0000298689
I
0.664
GSMUA_Achr1G09750_001
Musa acuminata
GSMUA_Achr1G09750_001
I
0.664
SapurV1A.0525s0230
Salix purpurea
SapurV1A.0525s0230
I
0.663
Gorai.005G234900
Gossypium raimondii
Gorai.005G234900
I
0.663
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.662
Solyc04g078420.1
Solanum lycopersicum
Solyc04g078420.1
I
0.661
PGSC0003DMG400003316
Solanum tuberosum
PGSC0003DMG400003316
I
0.661
Cucsa.368410
Cucumis sativus
Cucsa.368410
I
0.661