Lus10039735.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10039735.g T288218_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.684 0.667
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.684 0.667
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.667 0.677
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.667 0.677
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.662 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10039735 Myb 13 60
Lus10039735 Myb 66 111

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.908
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.849
PK24260.1 Cannabis sativa PK24260.1 N 0.848
TCM_007865 Theobroma cacao TCM_007865 I 0.830
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.819
MDP0000155426 Malus domestica MDP0000155426 I 0.816
MDP0000407613 Malus domestica MDP0000407613 N 0.816
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.816
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.814
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.812
Pm015302 Prunus mume Pm015302 N 0.812
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.807
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.793
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.786
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.786
Ca_22597 Cicer arietinum Ca_22597 N 0.781
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.777
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.765
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.764
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.762
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.759
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.758
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.756
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.754
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.750
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.749
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.744
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.738
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.738
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.733
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.733
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.732
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.730
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.730
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.729
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.726
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.725
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.725
Lus10018547.g Linum usitatissimum Lus10018547.g N 0.722
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.722
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.721
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.718
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.716
Lus10039772.g Linum usitatissimum Lus10039772.g N 0.716
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.712
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.711
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.709
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.708
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.706
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.706
TCM_030020 Theobroma cacao TCM_030020 I 0.704
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I 0.703
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.703
PK29337.1 Cannabis sativa PK29337.1 I 0.701
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.701
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.699
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.698
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.698
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.696
MDP0000131822 Malus domestica MDP0000131822 I 0.696
Lus10018545.g Linum usitatissimum Lus10018545.g N 0.696
Lus10039771.g Linum usitatissimum Lus10039771.g N 0.694
Lus10018546.g Linum usitatissimum Lus10018546.g N 0.694
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.693
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.693
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.693
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.693
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.692
GLYMA06G45570 Glycine max GLYMA06G45570 I 0.691
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N 0.691
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.690
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.690
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.688
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.688
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.688
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.688
TCM_007868 Theobroma cacao TCM_007868 I 0.688
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N 0.685
MYB58 Arabidopsis thaliana AT1G16490 D 0.684
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.684
MDP0000289283 Malus domestica MDP0000289283 I 0.683
Bo5g007320 Brassica oleracea Bo5g007320 I 0.681
Bra015481 Brassica rapa Bra015481 I 0.681
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.680
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N 0.680
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.680
TCM_026197 Theobroma cacao TCM_026197 I 0.678
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.678
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.677
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.677
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.676
Bo8g105490 Brassica oleracea Bo8g105490 I 0.676
Bra026720 Brassica rapa Bra026720 I 0.676
OS10G0478300 Oryza sativa OS10G0478300 I 0.675
Gorai.013G143000 Gossypium raimondii Gorai.013G143000 N 0.675
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.675
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.675
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.675
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.674
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.673
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.673
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.672
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.672
GLYMA12G11490 Glycine max GLYMA12G11490 N 0.671
GLYMA06G45520 Glycine max GLYMA06G45520 N 0.670
PK03488.1 Cannabis sativa PK03488.1 I 0.669
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.669
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.669
29933.m001454 Ricinus communis 29933.m001454 N 0.669
Pm009880 Prunus mume Pm009880 N 0.669
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.668
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.667
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.667
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.667
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.667
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.666
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.666
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.666
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.664
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.664
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.664
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.664
Bo6g122640 Brassica oleracea Bo6g122640 I 0.664
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N 0.664
Si010384m.g Setaria italica Si010384m.g I 0.663
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.663
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.662
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.662
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I 0.662
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.662
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.662
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.662
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.662
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I 0.661
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I 0.661
TCM_020889 Theobroma cacao TCM_020889 I 0.661