CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0
T308225_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.860
0.516
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.796
0.548
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0-mRNA-1
Nuclear receptor
1
62
MSHGFHFGILACRACAAFFRRTVVENKNYFCRQNGQCPVKKEMRNMCRACRFERCIRLGMNK
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc14668
Meloidogyne incognita
Minc14668
I
0.991
MhA1_Contig1192.frz3.gene3
Meloidogyne hapla
MhA1_Contig1192.frz3.gene3
I
0.986
GPLIN_000282900
Globodera pallida
GPLIN_000282900
I
0.972
maker-nMf.1.1.scaf01765-snap-gene-0.13
Meloidogyne floridensis
maker-nMf.1.1.scaf01765-snap-gene-0.13
I
0.970
L898_g12798
Steinernema monticolum
L898_g12798
I
0.922
SMUV_0000241501
Syphacia muris
SMUV_0000241501
N
0.898
L596_g14586
Steinernema carpocapsae
L596_g14586
I
0.890
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.887
L889_g6696
Steinernema feltiae
L889_g6696
I
0.885
ACOC_0000492601
Angiostrongylus costaricensis
ACOC_0000492601
I
0.884
L892_g14834
Steinernema scapterisci
L892_g14834
N
0.882
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.874
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.864
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.864
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.864
BXY_0690000
Bursaphelenchus xylophilus
BXY_0690000
I
0.862
BXY_1091100
Bursaphelenchus xylophilus
BXY_1091100
N
0.862
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.860
nhr-213
Caenorhabditis elegans
WBGene00011520
I
0.858
CRE30948
Caenorhabditis remanei
CRE30948
I
0.856
nhr-102
Caenorhabditis elegans
WBGene00003692
I
0.850
CRE08691
Caenorhabditis remanei
CRE08691
I
0.850
L898_g3512
Steinernema monticolum
L898_g3512
I
0.844
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.839
CJA09697
Caenorhabditis japonica
CJA09697
I
0.834
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.834
L892_g8137
Steinernema scapterisci
L892_g8137
N
0.834
nhr-178
Caenorhabditis elegans
WBGene00017510
I
0.833
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.829
SMUV_0000241401
Syphacia muris
SMUV_0000241401
I
0.824
L893_g9516
Steinernema glaseri
L893_g9516
N
0.823
CRE15675
Caenorhabditis remanei
CRE15675
I
0.823
CBN13569
Caenorhabditis brenneri
CBN13569
I
0.823
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.822
CBG20729
Caenorhabditis briggsae
CBG20729
I
0.821
CBG22870
Caenorhabditis briggsae
CBG22870
I
0.817
EVEC_0000956701
Enterobius vermicularis
EVEC_0000956701
I
0.816
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.816
CBG06601
Caenorhabditis briggsae
CBG06601
I
0.815
CRE18430
Caenorhabditis remanei
CRE18430
I
0.815
CBG06611
Caenorhabditis briggsae
CBG06611
I
0.815
PPA14290
Pristionchus pacificus
PPA14290
I
0.814
CJA28065
Caenorhabditis japonica
CJA28065
I
0.811
CRE15644
Caenorhabditis remanei
CRE15644
I
0.807
CBN23838
Caenorhabditis brenneri
CBN23838
I
0.807
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.796
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.793
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.793
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.793
CRE31070
Caenorhabditis remanei
CRE31070
I
0.793
nhr-231
Caenorhabditis elegans
WBGene00012449
I
0.787
CBG20727
Caenorhabditis briggsae
CBG20727
I
0.781
nhr-53
Caenorhabditis elegans
WBGene00003643
I
0.779
nhr-170
Caenorhabditis elegans
WBGene00008309
I
0.779
L893_g18997
Steinernema glaseri
L893_g18997
I
0.775
CRE09011
Caenorhabditis remanei
CRE09011
I
0.775
nhr-54
Caenorhabditis elegans
WBGene00003644
I
0.770
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.766
GPLIN_001629700
Globodera pallida
GPLIN_001629700
N
0.761
nhr-45
Caenorhabditis elegans
WBGene00003635
I
0.754
CBG14515
Caenorhabditis briggsae
CBG14515
I
0.754
CJA02156
Caenorhabditis japonica
CJA02156
I
0.754
CRE00301
Caenorhabditis remanei
CRE00301
I
0.754
CBN12210
Caenorhabditis brenneri
CBN12210
I
0.754
NBR_0001834801
Nippostrongylus brasiliensis
NBR_0001834801
I
0.748
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.747