CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ACOC_0000492601
(
Angiostrongylus costaricensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
ACOC_0000492601
T307920_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.912
0.671
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.884
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACOC_0000492601-mRNA-1
Nuclear receptor
7
77
GDCQVCGQLGHGSHFGVLTCRACAAFFRRTVVMNRQYTCRRANSSCQISKDERYLCRLCRYNKCLALGMTP
Links
Other
Nuclear receptor
family TFs
Other
Angiostrongylus costaricensis
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.983
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.978
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.978
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.978
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.976
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.973
CJA09697
Caenorhabditis japonica
CJA09697
I
0.960
CBG22870
Caenorhabditis briggsae
CBG22870
I
0.951
nhr-213
Caenorhabditis elegans
WBGene00011520
I
0.943
nhr-102
Caenorhabditis elegans
WBGene00003692
I
0.939
CRE18430
Caenorhabditis remanei
CRE18430
I
0.932
CRE08691
Caenorhabditis remanei
CRE08691
I
0.932
CBG06601
Caenorhabditis briggsae
CBG06601
I
0.932
CBG06611
Caenorhabditis briggsae
CBG06611
I
0.932
nhr-178
Caenorhabditis elegans
WBGene00017510
I
0.924
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.919
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.916
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.916
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.916
GPLIN_000282900
Globodera pallida
GPLIN_000282900
I
0.915
CRE15644
Caenorhabditis remanei
CRE15644
I
0.913
CBN23838
Caenorhabditis brenneri
CBN23838
I
0.913
CBG20729
Caenorhabditis briggsae
CBG20729
I
0.912
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.912
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.908
CRE31070
Caenorhabditis remanei
CRE31070
I
0.908
Minc14668
Meloidogyne incognita
Minc14668
I
0.906
CJA28065
Caenorhabditis japonica
CJA28065
I
0.904
MhA1_Contig1192.frz3.gene3
Meloidogyne hapla
MhA1_Contig1192.frz3.gene3
I
0.901
CRE30948
Caenorhabditis remanei
CRE30948
I
0.892
L898_g12798
Steinernema monticolum
L898_g12798
I
0.892
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.889
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0
I
0.884
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.884
L596_g14586
Steinernema carpocapsae
L596_g14586
I
0.882
CBN13569
Caenorhabditis brenneri
CBN13569
I
0.882
nhr-170
Caenorhabditis elegans
WBGene00008309
I
0.881
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.880
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.880
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.880
L892_g14834
Steinernema scapterisci
L892_g14834
N
0.879
L889_g6696
Steinernema feltiae
L889_g6696
I
0.877
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.877
CRE15675
Caenorhabditis remanei
CRE15675
I
0.877
nhr-231
Caenorhabditis elegans
WBGene00012449
I
0.866
nhr-54
Caenorhabditis elegans
WBGene00003644
I
0.865
CBG20727
Caenorhabditis briggsae
CBG20727
I
0.862
L898_g3512
Steinernema monticolum
L898_g3512
I
0.858
L898_g3514
Steinernema monticolum
L898_g3514
I
0.846
CBG06609
Caenorhabditis briggsae
CBG06609
I
0.844
CBG06599
Caenorhabditis briggsae
CBG06599
I
0.844
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.844
L889_g6695
Steinernema feltiae
L889_g6695
I
0.834
HPLM_0000974401
Haemonchus placei
HPLM_0000974401
I
0.832
NBR_0001834801
Nippostrongylus brasiliensis
NBR_0001834801
I
0.831
PPA14290
Pristionchus pacificus
PPA14290
I
0.830
L889_g6692
Steinernema feltiae
L889_g6692
I
0.827
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.823
maker-nMf.1.1.scaf01765-snap-gene-0.13
Meloidogyne floridensis
maker-nMf.1.1.scaf01765-snap-gene-0.13
I
0.822
L892_g2781
Steinernema scapterisci
L892_g2781
I
0.820
L898_g3515
Steinernema monticolum
L898_g3515
I
0.815
L596_g14596
Steinernema carpocapsae
L596_g14596
I
0.814
L596_g14589
Steinernema carpocapsae
L596_g14589
I
0.805
L893_g18997
Steinernema glaseri
L893_g18997
I
0.801
SMUV_0000241501
Syphacia muris
SMUV_0000241501
N
0.798
L889_g6694
Steinernema feltiae
L889_g6694
I
0.793
L596_g14590
Steinernema carpocapsae
L596_g14590
I
0.790
L893_g18992
Steinernema glaseri
L893_g18992
I
0.788
CBN00434
Caenorhabditis brenneri
CBN00434
I
0.786
L892_g2780
Steinernema scapterisci
L892_g2780
I
0.784
CRE18699
Caenorhabditis remanei
CRE18699
I
0.767
nhr-218
Caenorhabditis elegans
WBGene00011750
I
0.764
L898_g19021
Steinernema monticolum
L898_g19021
I
0.755
CBG14515
Caenorhabditis briggsae
CBG14515
I
0.747
nhr-45
Caenorhabditis elegans
WBGene00003635
I
0.747
CRE00301
Caenorhabditis remanei
CRE00301
I
0.747
CJA02156
Caenorhabditis japonica
CJA02156
I
0.747
CBN12210
Caenorhabditis brenneri
CBN12210
I
0.747
L596_g14580
Steinernema carpocapsae
L596_g14580
N
0.746