CBN23838 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN23838 T301831_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-142
M00703_2.00 		Caenorhabditis elegans
RGTCACAR
YTGTGACY		 PBM
Narasimhan et al.(2015)
pTH10714 		0.871 0.529
nhr-232
M00700_2.00 		Caenorhabditis elegans
NNTNTDWYN
NRWHANANN		 PBM
Narasimhan et al.(2015)
pTH10647 		0.842 0.500
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN23838 Nuclear receptor 15 86

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE15644 Caenorhabditis remanei CRE15644 I 0.993
CBG20729 Caenorhabditis briggsae CBG20729 I 0.992
CRE15675 Caenorhabditis remanei CRE15675 I 0.985
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.984
CBG20727 Caenorhabditis briggsae CBG20727 I 0.981
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.981
nhr-54 Caenorhabditis elegans WBGene00003644 I 0.973
CBN13569 Caenorhabditis brenneri CBN13569 I 0.967
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.913
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.909
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.907
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.906
CBG22870 Caenorhabditis briggsae CBG22870 I 0.903
L898_g3512 Steinernema monticolum L898_g3512 I 0.899
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.898
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.891
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.884
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.884
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.883
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.883
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.883
CRE30948 Caenorhabditis remanei CRE30948 I 0.882
CBG06599 Caenorhabditis briggsae CBG06599 I 0.871
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.871
CBG06609 Caenorhabditis briggsae CBG06609 I 0.871
CBN28290 Caenorhabditis brenneri CBN28290 I 0.869
CBN21486 Caenorhabditis brenneri CBN21486 I 0.869
CRE18430 Caenorhabditis remanei CRE18430 I 0.866
CBG06611 Caenorhabditis briggsae CBG06611 I 0.865
CBG06601 Caenorhabditis briggsae CBG06601 I 0.865
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.864
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.862
L892_g2782 Steinernema scapterisci L892_g2782 I 0.858
L892_g2781 Steinernema scapterisci L892_g2781 I 0.857
CJA09697 Caenorhabditis japonica CJA09697 I 0.853
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.851
L889_g6694 Steinernema feltiae L889_g6694 I 0.851
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.851
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.849
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.848
L893_g18992 Steinernema glaseri L893_g18992 I 0.847
CBG09567 Caenorhabditis briggsae CBG09567 I 0.845
L898_g3515 Steinernema monticolum L898_g3515 I 0.843
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.842
L898_g3514 Steinernema monticolum L898_g3514 I 0.836
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.832
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.829
L892_g2780 Steinernema scapterisci L892_g2780 I 0.823
CRE08691 Caenorhabditis remanei CRE08691 I 0.820
L898_g4018 Steinernema monticolum L898_g4018 N 0.817
L898_g12798 Steinernema monticolum L898_g12798 I 0.815
L889_g6696 Steinernema feltiae L889_g6696 I 0.815
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.814
CBG09320 Caenorhabditis briggsae CBG09320 I 0.812
CRE31070 Caenorhabditis remanei CRE31070 I 0.812
Minc14668 Meloidogyne incognita Minc14668 I 0.811
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.807
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.806
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.803
CRE08749 Caenorhabditis remanei CRE08749 I 0.802
CRE18699 Caenorhabditis remanei CRE18699 I 0.801
L889_g6695 Steinernema feltiae L889_g6695 I 0.799
L596_g14536 Steinernema carpocapsae L596_g14536 I 0.797
L889_g6692 Steinernema feltiae L889_g6692 I 0.797
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.792
L892_g14834 Steinernema scapterisci L892_g14834 N 0.792
CJA28065 Caenorhabditis japonica CJA28065 I 0.791
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.787
CRE08750 Caenorhabditis remanei CRE08750 N 0.786
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.780
L889_g6806 Steinernema feltiae L889_g6806 N 0.780
L889_g6792 Steinernema feltiae L889_g6792 I 0.769
L892_g14825 Steinernema scapterisci L892_g14825 I 0.768
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I 0.757
L893_g18997 Steinernema glaseri L893_g18997 I 0.753