CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g19019
(
Steinernema monticolum
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L898_g19019
T309452_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.862
0.567
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.826
0.507
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g19019.t1
Nuclear receptor
17
84
VTCQVCGRPAHGIHFTVVSCRACAAFFRRSVDDSKRYVCRRVTKNCDVATSNCRLCRWKRCQEIGMTL
Links
Other
Nuclear receptor
family TFs
Other
Steinernema monticolum
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L889_g6798
Steinernema feltiae
L889_g6798
I
0.967
L889_g6799
Steinernema feltiae
L889_g6799
I
0.965
L889_g6797
Steinernema feltiae
L889_g6797
I
0.957
L893_g18993
Steinernema glaseri
L893_g18993
I
0.920
L898_g4013
Steinernema monticolum
L898_g4013
I
0.916
L898_g4012
Steinernema monticolum
L898_g4012
I
0.907
L892_g14817
Steinernema scapterisci
L892_g14817
I
0.906
L898_g19021
Steinernema monticolum
L898_g19021
I
0.903
L898_g4014
Steinernema monticolum
L898_g4014
N
0.894
L898_g21763
Steinernema monticolum
L898_g21763
I
0.886
L892_g10842
Steinernema scapterisci
L892_g10842
I
0.881
L596_g14533
Steinernema carpocapsae
L596_g14533
I
0.881
L596_g14537
Steinernema carpocapsae
L596_g14537
I
0.878
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.878
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.878
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.878
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.876
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.876
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.875
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.873
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.873
L898_g19014
Steinernema monticolum
L898_g19014
I
0.871
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.862
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.858
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.857
CRE30948
Caenorhabditis remanei
CRE30948
I
0.856
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.854
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.854
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.854
CRE31070
Caenorhabditis remanei
CRE31070
I
0.854
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.854
L898_g2943
Steinernema monticolum
L898_g2943
N
0.853
L889_g8187
Steinernema feltiae
L889_g8187
I
0.845
L898_g4015
Steinernema monticolum
L898_g4015
N
0.840
L892_g14818
Steinernema scapterisci
L892_g14818
I
0.839
L898_g2944
Steinernema monticolum
L898_g2944
N
0.839
CJA28065
Caenorhabditis japonica
CJA28065
I
0.838
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.836
L898_g20180
Steinernema monticolum
L898_g20180
I
0.831
L898_g12799
Steinernema monticolum
L898_g12799
I
0.829
L892_g10840
Steinernema scapterisci
L892_g10840
N
0.828
L889_g6792
Steinernema feltiae
L889_g6792
I
0.828
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.826
L596_g14536
Steinernema carpocapsae
L596_g14536
I
0.825
CRE05044
Caenorhabditis remanei
CRE05044
I
0.824
L596_g14541
Steinernema carpocapsae
L596_g14541
N
0.817
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.815
L898_g32142
Steinernema monticolum
L898_g32142
N
0.814
L889_g6804
Steinernema feltiae
L889_g6804
I
0.809
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.805
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.800
L893_g27935
Steinernema glaseri
L893_g27935
N
0.791
L596_g14532
Steinernema carpocapsae
L596_g14532
I
0.786
L893_g27930
Steinernema glaseri
L893_g27930
I
0.782
L892_g2783
Steinernema scapterisci
L892_g2783
N
0.781
NBR_0001834801
Nippostrongylus brasiliensis
NBR_0001834801
I
0.781
L892_g14824
Steinernema scapterisci
L892_g14824
N
0.778
CRE08753
Caenorhabditis remanei
CRE08753
I
0.775
L889_g6803
Steinernema feltiae
L889_g6803
N
0.774
HPLM_0000974401
Haemonchus placei
HPLM_0000974401
I
0.773
L898_g4016
Steinernema monticolum
L898_g4016
N
0.769
L889_g8185
Steinernema feltiae
L889_g8185
I
0.766
L889_g6800
Steinernema feltiae
L889_g6800
N
0.765
L892_g10843
Steinernema scapterisci
L892_g10843
I
0.754
L892_g14825
Steinernema scapterisci
L892_g14825
I
0.746