Ciclev10024463m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10024463m.g T257902_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10024463m MADS box 10 56

Links

Other MADS box family TFs
Other Citrus clementina TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008984 Ricinus communis 30128.m008984 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.848
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.717
AGL80 Arabidopsis thaliana AT5G48670 D 0.804
Bo2g104810 Brassica oleracea Bo2g104810 I 0.717
Bo9g078450 Brassica oleracea Bo9g078450 I 0.761
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.739
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.804
Bra018490 Brassica rapa Bra018490 I 0.739
Bra029469 Brassica rapa Bra029469 I 0.761
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.800
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.848
Ca_06495 Cicer arietinum Ca_06495 I 0.783
Ca_13275 Cicer arietinum Ca_13275 I 0.826
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.783
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.896
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.896
Cla005226 Citrullus lanatus Cla005226 I 0.822
Cla009163 Citrullus lanatus Cla009163 I 0.783
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.804
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.717
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.717
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.717
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.717
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.739
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.717
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.739
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.717
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.783
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.783
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.848
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.804
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.783
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.804
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.761
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.761
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.783
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.761
MDP0000846004 Malus domestica MDP0000846004 I 0.804
MDP0000925348 Malus domestica MDP0000925348 I 0.804
mgf026186m Mimulus guttatus mgf026186m I 0.717
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.826
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 1.000
Pm004396 Prunus mume Pm004396 I 0.822
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.826
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.848
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.848
AGL87 Populus trichocarpa POPTR_0013s11210 N 0.739
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.822
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.848
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.761
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.761
SapurV1A.0690s0130 Salix purpurea SapurV1A.0690s0130 N 0.739
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.761
TCM_025670 Theobroma cacao TCM_025670 I 0.783
TCM_025671 Theobroma cacao TCM_025671 I 0.761
TCM_026842 Theobroma cacao TCM_026842 I 0.848
TCM_026845 Theobroma cacao TCM_026845 I 0.739
TCM_042799 Theobroma cacao TCM_042799 I 0.717
TCM_042848 Theobroma cacao TCM_042848 N 0.717
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.761
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.739
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.804
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.804
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.717
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.848