Cucsa.031600 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.031600 T344629_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.911 0.486
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.910 0.446
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.894 0.459
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.031600.1 TCP 14 161

Links

Other TCP family TFs
Other Cucumis sativus TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.904
30167.m000856 Ricinus communis 30167.m000856 I 0.905
30174.m008721 Ricinus communis 30174.m008721 I 0.873
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.891
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.877
TCP1 Arabidopsis thaliana AT1G67260 D 0.894
BRC2 Arabidopsis thaliana AT1G68800 I 0.907
Bo2g055640 Brassica oleracea Bo2g055640 I 0.863
Bo2g061250 Brassica oleracea Bo2g061250 I 0.879
Bo6g099040 Brassica oleracea Bo6g099040 I 0.897
Bo6g103670 Brassica oleracea Bo6g103670 I 0.884
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.892
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.869
Bra004097 Brassica rapa Bra004097 I 0.876
Bra004212 Brassica rapa Bra004212 I 0.895
Bra034010 Brassica rapa Bra034010 I 0.883
Bra038350 Brassica rapa Bra038350 I 0.879
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.869
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.892
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.892
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.872
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.927
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.910
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.854
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.871
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.921
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.924
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.832
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.894
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.871
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.914
Cla002355 Citrullus lanatus Cla002355 I 0.911
Cla007227 Citrullus lanatus Cla007227 I 0.943
Cla016709 Citrullus lanatus Cla016709 I 0.935
Cla019282 Citrullus lanatus Cla019282 N 0.829
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.925
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.901
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.869
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.866
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.899
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.829
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.917
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.918
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.900
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.904
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.912
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.840
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.912
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.914
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.921
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.830
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.922
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.923
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.901
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.886
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.823
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.906
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.838
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.885
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.837
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.864
MDP0000173048 Malus domestica MDP0000173048 I 0.920
MDP0000224810 Malus domestica MDP0000224810 N 0.827
MDP0000272980 Malus domestica MDP0000272980 I 0.898
mgf019480m Mimulus guttatus mgf019480m I 0.892
mgf022233m Mimulus guttatus mgf022233m I 0.886
mgf024687m Mimulus guttatus mgf024687m I 0.827
mgf026636m Mimulus guttatus mgf026636m I 0.869
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.909
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.912
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.916
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.871
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.914
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.908
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.833
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.835
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.865
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.921
PK12240.1 Cannabis sativa PK12240.1 D 0.910
PK19717.1 Cannabis sativa PK19717.1 D 0.911
Pm015499 Prunus mume Pm015499 I 0.870
Pm029002 Prunus mume Pm029002 I 0.906
Pm030202 Prunus mume Pm030202 I 0.825
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.901
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.926
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.854
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.856
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.903
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.825
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.906
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.871
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.851
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.923
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.849
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.913
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.847
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.847
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.859
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.919
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.917
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.835
TCM_011874 Theobroma cacao TCM_011874 I 0.912
TCM_019518 Theobroma cacao TCM_019518 I 0.908
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.897
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.904
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.889