BCL6 (Homo sapiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSG00000113916 T094856_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00227_2.00		 Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y		 (Direct) (Direct)
BCL6
M00228_2.00		 Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF		 (Direct) (Direct)
BCL6
M04424_2.00		 Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1		 (Direct) (Direct)
BCL6
M04425_2.00		 Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2		 (Direct) (Direct)
BCL6
M04426_2.00		 Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1		 (Direct) (Direct)
BCL6
M04427_2.00		 Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2		 (Direct) (Direct)
BCL6
M08877_2.00		 Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A		 (Direct) (Direct)
BCL6
M10180_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01		 (Direct) (Direct)
BCL6
M10181_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02		 (Direct) (Direct)
BCL6
M10182_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01		 (Direct) (Direct)
BCL6
M10183_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3		 (Direct) (Direct)
BCL6
M10184_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.827 1.000
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.827 1.000
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.827 1.000
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00227_2.00 C2H2 ZF 15 38
M00227_2.00 C2H2 ZF 43 65
M00227_2.00 C2H2 ZF 71 93
M00227_2.00 C2H2 ZF 99 121
M00227_2.00 C2H2 ZF 127 149
M00227_2.00 C2H2 ZF 155 172
M00228_2.00 C2H2 ZF 15 38
M00228_2.00 C2H2 ZF 43 65
M00228_2.00 C2H2 ZF 71 93
M00228_2.00 C2H2 ZF 99 121
M00228_2.00 C2H2 ZF 127 149
M00228_2.00 C2H2 ZF 155 178

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000232014 C2H2 ZF 518 541
ENSP00000232014 C2H2 ZF 546 568
ENSP00000232014 C2H2 ZF 574 596
ENSP00000232014 C2H2 ZF 602 624
ENSP00000232014 C2H2 ZF 630 652
ENSP00000232014 C2H2 ZF 658 681
ENSP00000384371 C2H2 ZF 518 541
ENSP00000384371 C2H2 ZF 546 568
ENSP00000384371 C2H2 ZF 574 596
ENSP00000384371 C2H2 ZF 602 624
ENSP00000384371 C2H2 ZF 630 652
ENSP00000384371 C2H2 ZF 658 681
ENSP00000413122 C2H2 ZF 518 540
ENSP00000413122 C2H2 ZF 546 568
ENSP00000413122 C2H2 ZF 574 596
ENSP00000413122 C2H2 ZF 602 625
ENSP00000479784 C2H2 ZF 518 540
ENSP00000479784 C2H2 ZF 546 568
ENSP00000479784 C2H2 ZF 574 596
ENSP00000479784 C2H2 ZF 602 625

Links

Other C2H2 ZF family TFs
Other Homo sapiens TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.000
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
PK08602.1 Cannabis sativa PK08602.1 D 0.000
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.000
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.000
Bo2g016490 Brassica oleracea Bo2g016490 I 0.000
Bo2g083920 Brassica oleracea Bo2g083920 I 0.000
Bo3g013160 Brassica oleracea Bo3g013160 I 0.000
Bo6g086320 Brassica oleracea Bo6g086320 I 0.000
Bo6g119660 Brassica oleracea Bo6g119660 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
Bra003752 Brassica rapa Bra003752 I 0.000
Bra006460 Brassica rapa Bra006460 I 0.000
Bra008200 Brassica rapa Bra008200 I 0.000
Bra015840 Brassica rapa Bra015840 I 0.000
Bra023674 Brassica rapa Bra023674 I 0.000
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.000
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.000
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.000
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.000
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.000
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.000
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.000
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.000
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.000
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.000
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.000
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
TCM_026121 Theobroma cacao TCM_026121 I 0.000
TCM_034132 Theobroma cacao TCM_034132 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.000
Ca_10770 Cicer arietinum Ca_10770 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cla021113 Citrullus lanatus Cla021113 I 0.000
Cla022803 Citrullus lanatus Cla022803 I 0.000
Pm003634 Prunus mume Pm003634 I 0.000
Pm006274 Prunus mume Pm006274 I 0.000
29680.m001737 Ricinus communis 29680.m001737 I 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
30170.m014115 Ricinus communis 30170.m014115 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.000
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.000
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.000
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.000
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.000
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.000
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.000
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.000
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.000
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.000
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.000
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.000
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.000
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.000
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.000
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.000
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.000
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.000
MDP0000141335 Malus domestica MDP0000141335 I 0.000
MDP0000153866 Malus domestica MDP0000153866 I 0.000
MDP0000223609 Malus domestica MDP0000223609 I 0.000
MDP0000250924 Malus domestica MDP0000250924 I 0.000
MDP0000250927 Malus domestica MDP0000250927 I 0.000
MDP0000295902 Malus domestica MDP0000295902 I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.000
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.000
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.000
PK07829.1 Cannabis sativa PK07829.1 I 0.000
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.000
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000