Pm003257 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm003257 T257025_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm003257 MADS box 10 57

Links

Other MADS box family TFs
Other Prunus mume TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.750
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.766
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.745
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.766
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.711
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.766
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.766
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.723
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.702
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.787
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.818
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.711
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.787
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.723
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.702
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.702
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.787
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.723
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.702
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.723
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.787
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.787
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.745
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.702
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.702
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.702
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
MDP0000925348 Malus domestica MDP0000925348 I 0.766
MDP0000846004 Malus domestica MDP0000846004 I 0.809
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.745
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.702
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.766
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.787
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.830
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.787
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.723
TCM_042799 Theobroma cacao TCM_042799 I 0.745
TCM_026845 Theobroma cacao TCM_026845 I 0.745
TCM_026842 Theobroma cacao TCM_026842 I 0.809
TCM_025671 Theobroma cacao TCM_025671 I 0.766
TCM_025670 Theobroma cacao TCM_025670 I 0.771
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.723
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 1.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.787
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.809
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.766
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.723
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.702
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
Bra029469 Brassica rapa Bra029469 I 0.745
Bra018490 Brassica rapa Bra018490 I 0.766
Bo9g078450 Brassica oleracea Bo9g078450 I 0.745
Bo2g104810 Brassica oleracea Bo2g104810 I 0.766
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.702
mgf026186m Mimulus guttatus mgf026186m I 0.705
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.702
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.750
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.792
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.702
Ca_06495 Cicer arietinum Ca_06495 I 0.702
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.702
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.745
30128.m008984 Ricinus communis 30128.m008984 I 0.792
Pm004396 Prunus mume Pm004396 I 0.778
Cla005226 Citrullus lanatus Cla005226 I 0.733
Ca_13275 Cicer arietinum Ca_13275 I 0.723
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.708
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.702
TCM_025676 Theobroma cacao TCM_025676 N 0.723
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700