evm.TU.contig_24608 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_24608 T258025_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_24608.1 MADS box 10 56

Links

Other MADS box family TFs
Other Carica papaya TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.723
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.778
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.702
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.708
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.822
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.745
TCM_026842 Theobroma cacao TCM_026842 I 0.723
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.818
Ca_08934 Cicer arietinum Ca_08934 I 0.705
Ca_13275 Cicer arietinum Ca_13275 I 0.756
Cla005226 Citrullus lanatus Cla005226 I 0.711
Pm003257 Prunus mume Pm003257 I 0.702
Pm004396 Prunus mume Pm004396 I 0.822
30199.m000879 Ricinus communis 30199.m000879 I 0.745
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
mgf026186m Mimulus guttatus mgf026186m I 0.795
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.723
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.717
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.844
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.745
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.787
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.864
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.822
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.909
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.814
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.913
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.818
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.818
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.822
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.800
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.702
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.711
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.766
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.773
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.844
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.745
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.822
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.833
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.778
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.750
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.809
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.723
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.750
MDP0000925348 Malus domestica MDP0000925348 I 0.844
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.745
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.750
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.723
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.711
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.733
Pm003258 Prunus mume Pm003258 N 0.711
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.822
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.773
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.979
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.915
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.778
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.733
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.787
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.756
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.750
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N 0.809
evm.TU.supercontig_1136.1 Carica papaya evm.TU.supercontig_1136.1 N 0.720
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.894
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.708
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.915
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.936
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.787
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.800
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.915
evm.TU.supercontig_4.187 Carica papaya evm.TU.supercontig_4.187 N 0.769
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.723
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.723
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.750