Bra030647 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra030647 T245073_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD2
M06953_2.00 		Arabidopsis thaliana
SCGANRAWDNCGGHR
YDCCGNHWTYNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_col_a 		0.959 0.959
LBD2
M06954_2.00 		Arabidopsis thaliana
SCGANAAWNTCGGDN
NHCCGANWTTNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_colamp_a 		0.959 0.959
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030647.1-P LOB 20 116

Links

Other LOB family TFs
Other Brassica rapa TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I
ANCCAN_09880 Ancylostoma caninum ANCCAN_09880 I
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I
ANCCEY_01254 Ancylostoma ceylanicum ANCCEY_01254 I
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I
ASU_02757 Ascaris suum ASU_02757 N
ASU_03657 Ascaris suum ASU_03657 I
ASU_03870 Ascaris suum ASU_03870 I
ASU_12501 Ascaris suum ASU_12501 I
ASU_13587 Ascaris suum ASU_13587 I
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I
Bm4980 Brugia malayi Bm4980 I
Bm5319 Brugia malayi Bm5319 I
BTMF_0000217201 Brugia timori BTMF_0000217201 I
BTMF_0000941401 Brugia timori BTMF_0000941401 I
BTMF_0001388101 Brugia timori BTMF_0001388101 I
BXY_0360200 Bursaphelenchus xylophilus BXY_0360200 I
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I
CBG01866 Caenorhabditis briggsae CBG01866 I
CBG03844 Caenorhabditis briggsae CBG03844 I
CBG09380 Caenorhabditis briggsae CBG09380 I
CBG10855 Caenorhabditis briggsae CBG10855 I
CBG10857 Caenorhabditis briggsae CBG10857 I
CBG16594 Caenorhabditis briggsae CBG16594 I
CBG23379 Caenorhabditis briggsae CBG23379 I
CBG23380 Caenorhabditis briggsae CBG23380 D
CBG23381 Caenorhabditis briggsae CBG23381 I
CBG26996 Caenorhabditis briggsae CBG26996 I
CBG26996_CONSTRUCT PBM CONSTRUCTS CBG26996_CONSTRUCT D
CBN18198 Caenorhabditis brenneri CBN18198 I
CBN19235 Caenorhabditis brenneri CBN19235 I
CBN20518 Caenorhabditis brenneri CBN20518 I
CBN20749 Caenorhabditis brenneri CBN20749 I
CBN24827 Caenorhabditis brenneri CBN24827 I
CBN28497 Caenorhabditis brenneri CBN28497 I
CBN28791 Caenorhabditis brenneri CBN28791 I
CBN29725 Caenorhabditis brenneri CBN29725 I
CJA00680 Caenorhabditis japonica CJA00680 I
CJA08896 Caenorhabditis japonica CJA08896 I
CJA13458 Caenorhabditis japonica CJA13458 I
CJA41479 Caenorhabditis japonica CJA41479 I
CRE00149 Caenorhabditis remanei CRE00149 I
CRE00606 Caenorhabditis remanei CRE00606 I
CRE03310 Caenorhabditis remanei CRE03310 I
CRE08259 Caenorhabditis remanei CRE08259 I
CRE25378 Caenorhabditis remanei CRE25378 I
CRE27050 Caenorhabditis remanei CRE27050 I
CRE27052 Caenorhabditis remanei CRE27052 I
CRE27053 Caenorhabditis remanei CRE27053 I
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I
DME_0000591901 Dracunculus medinensis DME_0000591901 I
DME_0000693601 Dracunculus medinensis DME_0000693601 I
DME_0000747901 Dracunculus medinensis DME_0000747901 I
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I
GPLIN_000337500 Globodera pallida GPLIN_000337500 I
GPLIN_001175700 Globodera pallida GPLIN_001175700 I
Hba_12763 Heterorhabditis bacteriophora Hba_12763 I
HCOI00601000 Haemonchus contortus HCOI00601000 I
HCOI00618700 Haemonchus contortus HCOI00618700 I
HCOI01292200 Haemonchus contortus HCOI01292200 I
HCOI01525900 Haemonchus contortus HCOI01525900 I
HCOI01554200 Haemonchus contortus HCOI01554200 I
HPBE_0000704501 Heligmosomoides bakeri HPBE_0000704501 I
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I
HPBE_0001246601 Heligmosomoides bakeri HPBE_0001246601 I
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I
L596_g11035 Steinernema carpocapsae L596_g11035 I
L596_g12276 Steinernema carpocapsae L596_g12276 I
L596_g12321 Steinernema carpocapsae L596_g12321 I
L596_g23123 Steinernema carpocapsae L596_g23123 I
L596_g23777 Steinernema carpocapsae L596_g23777 I
L596_g23863 Steinernema carpocapsae L596_g23863 I
L596_g27472 Steinernema carpocapsae L596_g27472 I
L889_g11570 Steinernema feltiae L889_g11570 I
L889_g1557 Steinernema feltiae L889_g1557 I
L889_g17247 Steinernema feltiae L889_g17247 I
L889_g1891 Steinernema feltiae L889_g1891 I
L889_g29879 Steinernema feltiae L889_g29879 I
L889_g7780 Steinernema feltiae L889_g7780 I
L892_g17612 Steinernema scapterisci L892_g17612 I
L892_g4134 Steinernema scapterisci L892_g4134 I
L892_g4169 Steinernema scapterisci L892_g4169 I
L892_g8671 Steinernema scapterisci L892_g8671 I
L893_g13285 Steinernema glaseri L893_g13285 I
L893_g21283 Steinernema glaseri L893_g21283 I
L893_g25227 Steinernema glaseri L893_g25227 I
L893_g28857 Steinernema glaseri L893_g28857 I
L893_g3010 Steinernema glaseri L893_g3010 I
L893_g3565 Steinernema glaseri L893_g3565 I
L898_g22454 Steinernema monticolum L898_g22454 I
L898_g23058 Steinernema monticolum L898_g23058 I
L898_g26357 Steinernema monticolum L898_g26357 I
L898_g2764 Steinernema monticolum L898_g2764 I
L898_g9866 Steinernema monticolum L898_g9866 I
LOAG_00300 Loa loa LOAG_00300 I
LOAG_08615 Loa loa LOAG_08615 I
LOAG_08636 Loa loa LOAG_08636 I
LOAG_16377 Loa loa LOAG_16377 I
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I
MhA1_Contig320.frz3.gene45 Meloidogyne hapla MhA1_Contig320.frz3.gene45 I
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I
NECAME_00872 Necator americanus NECAME_00872 I
NECAME_01944 Necator americanus NECAME_01944 I
NECAME_08394 Necator americanus NECAME_08394 I
nhr-1 Caenorhabditis elegans WBGene00003600 D
nhr-10 Caenorhabditis elegans WBGene00003609 I
nhr-120 Caenorhabditis elegans WBGene00003710 I
nhr-136 Caenorhabditis elegans WBGene00003726 I
nhr-141 Caenorhabditis elegans WBGene00017787 I
nhr-153 Caenorhabditis elegans WBGene00007546 I
nhr-154 Caenorhabditis elegans WBGene00007547 D
nhr-173 Caenorhabditis elegans WBGene00016975 I
nhr-49 Caenorhabditis elegans WBGene00003639 D
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I
Ppa-nhr-120 Pristionchus pacificus PPA00183 I
PPA06637 Pristionchus pacificus PPA06637 I
PPA10975 Pristionchus pacificus PPA10975 N
PPA21777 Pristionchus pacificus PPA21777 I
PPA24468 Pristionchus pacificus PPA24468 I
PPA24481 Pristionchus pacificus PPA24481 I
PPA27013 Pristionchus pacificus PPA27013 N
PPA29597 Pristionchus pacificus PPA29597 I
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I
scaffold1383-EXSNAP2012.1 Pristionchus exspectatus scaffold1383-EXSNAP2012.1 N
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I
scaffold265-EXSNAP2012.2 Pristionchus exspectatus scaffold265-EXSNAP2012.2 I
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I
scaffold92-EXSNAP2012.31 Pristionchus exspectatus scaffold92-EXSNAP2012.31 N
SMUV_0000708401 Syphacia muris SMUV_0000708401 I
SMUV_0001072301 Syphacia muris SMUV_0001072301 I
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I
TCLT_0000256201 Thelazia callipaeda TCLT_0000256201 I
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I
TCNE_0001076801 Toxocara canis TCNE_0001076801 N
WBGene00236987 Onchocerca volvulus WBGene00236987 I
WBGene00240403 Onchocerca volvulus WBGene00240403 I
WBGene00241993 Onchocerca volvulus WBGene00241993 I