lin54 (Takifugu rubripes)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 ENSTRUG00000018428 T345333_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.947
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.947
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.907
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.907
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.853
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.840
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.827
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.827
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.680
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.667
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.667
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.667
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.667
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.667
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.600
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.600
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.600
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.600
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.600
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.587
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.587
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.587
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.573
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.560
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.560
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.547
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.547
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000047165 TCR/CxC 519 555
ENSTRUP00000047165 TCR/CxC 593 632
ENSTRUP00000047166 TCR/CxC 549 585
ENSTRUP00000047166 TCR/CxC 623 662
ENSTRUP00000047167 TCR/CxC 436 472
ENSTRUP00000047167 TCR/CxC 510 549

Links

Other TCR/CxC family TFs
Other Takifugu rubripes TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
TCP1 Arabidopsis thaliana AT1G67260 D
BRC2 Arabidopsis thaliana AT1G68800 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I
Bo2g055640 Brassica oleracea Bo2g055640 I
Bo2g061250 Brassica oleracea Bo2g061250 I
Bo6g099040 Brassica oleracea Bo6g099040 I
Bo6g103670 Brassica oleracea Bo6g103670 I
Bra004097 Brassica rapa Bra004097 I
Bra004212 Brassica rapa Bra004212 I
Bra034010 Brassica rapa Bra034010 I
Bra038350 Brassica rapa Bra038350 I
PK12240.1 Cannabis sativa PK12240.1 D
PK19717.1 Cannabis sativa PK19717.1 D
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
Carubv10020555m.g Capsella rubella Carubv10020555m.g I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I
Cla002355 Citrullus lanatus Cla002355 I
Cla007227 Citrullus lanatus Cla007227 I
Cla016709 Citrullus lanatus Cla016709 I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I
Cucsa.031600 Cucumis sativus Cucsa.031600 I
Cucsa.113660 Cucumis sativus Cucsa.113660 N
Cucsa.238090 Cucumis sativus Cucsa.238090 I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Cucsa.283930 Cucumis sativus Cucsa.283930 I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
GLYMA04G22407 Glycine max GLYMA04G22407 I
GLYMA05G07943 Glycine max GLYMA05G07943 I
GLYMA06G23410 Glycine max GLYMA06G23410 N
GLYMA08G28691 Glycine max GLYMA08G28691 I
GLYMA13G07475 Glycine max GLYMA13G07475 I
GLYMA17G13065 Glycine max GLYMA17G13065 I
GLYMA18G51581 Glycine max GLYMA18G51581 I
GLYMA19G05921 Glycine max GLYMA19G05921 I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I
MLOC_4614 Hordeum vulgare MLOC_4614 I
MLOC_70116 Hordeum vulgare MLOC_70116 I
Lus10003078.g Linum usitatissimum Lus10003078.g I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10034072.g Linum usitatissimum Lus10034072.g I
Lus10035055.g Linum usitatissimum Lus10035055.g I
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
cassava10552.m1 Manihot esculenta cassava10552.m1 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
MTR_1g103380 Medicago truncatula MTR_1g103380 I
MTR_4g111935 Medicago truncatula MTR_4g111935 I
MTR_6g017055 Medicago truncatula MTR_6g017055 I
MTR_7g018500 Medicago truncatula MTR_7g018500 I
mgf019480m Mimulus guttatus mgf019480m I
mgf022233m Mimulus guttatus mgf022233m I
mgf024687m Mimulus guttatus mgf024687m I
mgf026636m Mimulus guttatus mgf026636m I
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
OMERI09G07770 Oryza meridionalis OMERI09G07770 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
OPUNC03G28490 Oryza punctata OPUNC03G28490 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
TB1 Oryza sativa OS03G0706500 D
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I
Pm015499 Prunus mume Pm015499 I
Pm029002 Prunus mume Pm029002 I
Pm030202 Prunus mume Pm030202 I
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
29738.m001041 Ricinus communis 29738.m001041 I
30167.m000856 Ricinus communis 30167.m000856 I
30174.m008721 Ricinus communis 30174.m008721 I
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I
Sb01g010690 Sorghum bicolor Sb01g010690 I
Sb02g024450 Sorghum bicolor Sb02g024450 I
TCM_011874 Theobroma cacao TCM_011874 I
TCM_012252 Theobroma cacao TCM_012252 I
TCM_019518 Theobroma cacao TCM_019518 I
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I
TRIUR3_31795 Triticum urartu TRIUR3_31795 I
BRC2 Vitis vinifera VIT_01s0011g02920 I
TCP1 Vitis vinifera VIT_14s0083g00150 I
AC190734.2_FG003 Zea mays AC190734.2_FG003 I
AC233950.1_FG002 Zea mays AC233950.1_FG002 I
GRMZM2G031905 Zea mays GRMZM2G031905 I
GRMZM2G062711 Zea mays GRMZM2G062711 I
GRMZM2G110242 Zea mays GRMZM2G110242 I