Gorai.007G271900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.007G271900 T008596_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.735 0.837
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.723 0.857
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.723 0.857
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.723 0.857
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.704 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.682 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G271900.1 AP2 33 84

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.723
DREB2G Arabidopsis thaliana AT5G18450 D 0.735
PK07402.1 Cannabis sativa PK07402.1 D 0.704
PK08602.1 Cannabis sativa PK08602.1 D 0.682
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.685
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.696
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.695
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.695
Bo2g016490 Brassica oleracea Bo2g016490 I 0.715
Bo2g083920 Brassica oleracea Bo2g083920 I 0.728
Bo3g013160 Brassica oleracea Bo3g013160 I 0.691
Bo6g086320 Brassica oleracea Bo6g086320 I 0.720
Bo6g119660 Brassica oleracea Bo6g119660 I 0.723
Bo9g155940 Brassica oleracea Bo9g155940 I 0.735
Bra002159 Brassica rapa Bra002159 I 0.735
Bra003752 Brassica rapa Bra003752 I 0.720
Bra006460 Brassica rapa Bra006460 I 0.691
Bra008200 Brassica rapa Bra008200 I 0.728
Bra015840 Brassica rapa Bra015840 I 0.723
Bra023674 Brassica rapa Bra023674 I 0.715
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.723
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.735
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.735
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.730
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.730
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.701
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.701
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.677
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.717
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.697
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.685
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.705
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.724
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.711
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.704
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.691
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.680
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.735
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.717
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.694
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.704
OB08G30790 Oryza brachyantha OB08G30790 I 0.695
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.695
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.695
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.695
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.695
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.695
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.695
DREB2C Oryza sativa OS08G0565200 I 0.695
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.716
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.735
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.729
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.727
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.695
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.709
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.706
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.679
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.731
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.750
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.693
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.690
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.735
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.707
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.707
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.735
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.716
TCM_026121 Theobroma cacao TCM_026121 I 0.699
TCM_034132 Theobroma cacao TCM_034132 I 0.726
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.709
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.739
Ca_10770 Cicer arietinum Ca_10770 I 0.735
Cla006713 Citrullus lanatus Cla006713 I 0.710
Cla021113 Citrullus lanatus Cla021113 I 0.736
Cla022803 Citrullus lanatus Cla022803 I 0.685
Pm003634 Prunus mume Pm003634 I 0.750
Pm006274 Prunus mume Pm006274 I 0.739
Pm015262 Prunus mume Pm015262 I 0.679
29680.m001737 Ricinus communis 29680.m001737 I 0.718
29729.m002292 Ricinus communis 29729.m002292 I 0.698
30170.m014115 Ricinus communis 30170.m014115 I 0.731
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.708
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.722
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.731
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.730
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.711
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.685
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.739
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.698
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.709
mgf007881m Mimulus guttatus mgf007881m I 0.688
mgf017629m Mimulus guttatus mgf017629m I 0.715
mgf024545m Mimulus guttatus mgf024545m I 0.736
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.682
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.688
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.683
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.735
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.723
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.729
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.723
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.729
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.723
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.731
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.692
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.679
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.677
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.695
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.680
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.728
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.699
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.735
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.682
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.734
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.685
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.734
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.748
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.736
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.736
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.735
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.706
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.700
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.692
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.679
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.679
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.729
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.691
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.700
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.691
MDP0000141335 Malus domestica MDP0000141335 I 0.726
MDP0000153866 Malus domestica MDP0000153866 I 0.684
MDP0000250924 Malus domestica MDP0000250924 I 0.747
MDP0000250927 Malus domestica MDP0000250927 I 0.743
MDP0000295902 Malus domestica MDP0000295902 I 0.726
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.679
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.731
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.712
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.732
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.677
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.709
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.694
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.709
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.694
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.735
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.697
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.723
PK07829.1 Cannabis sativa PK07829.1 I 0.685
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.702
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.735
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.707