orange1.1g047530m.g (Citrus sinensis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 orange1.1g047530m.g T247178_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.702 0.702
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g047530m LOB 26 72

Links

Other LOB family TFs
Other Citrus sinensis TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.000
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.000
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.000
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.000
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.000
30199.m000879 Ricinus communis 30199.m000879 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.000
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.000
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.000
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
Pm004396 Prunus mume Pm004396 I 0.000
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.000
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Ca_08934 Cicer arietinum Ca_08934 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Pavir.Eb00487 Panicum virgatum Pavir.Eb00487 N 0.000
Pavir.Ib03850 Panicum virgatum Pavir.Ib03850 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.000
MTR_7g055940 Medicago truncatula MTR_7g055940 N 0.000
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.000
GRMZM5G839969 Zea mays GRMZM5G839969 N 0.000
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.000
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.000
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.000
MTR_4g028800 Medicago truncatula MTR_4g028800 N 0.000
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.000
MTR_7g055800 Medicago truncatula MTR_7g055800 N 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.000
Si019470m.g Setaria italica Si019470m.g N 0.000
Aquca_003_00269 Aquilegia coerulea Aquca_003_00269 N 0.000
Aquca_003_00270 Aquilegia coerulea Aquca_003_00270 N 0.000
Aquca_003_00271 Aquilegia coerulea Aquca_003_00271 N 0.000
Aquca_003_00272 Aquilegia coerulea Aquca_003_00272 N 0.000
Aquca_029_00010 Aquilegia coerulea Aquca_029_00010 N 0.000
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.000