cassava19475.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava19475.valid.m1 T006830_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.780 0.918
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.729 0.857
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.699 0.816
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.698 0.776
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.694 0.796
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.694 0.796
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.694 0.796
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.677 0.816
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.677 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19475.valid.m1 AP2 80 131

Links

Other AP2 family TFs
Other Manihot esculenta TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29680.m001737 Ricinus communis 29680.m001737 I 0.677
29729.m002292 Ricinus communis 29729.m002292 I 0.802
30170.m014115 Ricinus communis 30170.m014115 I 0.697
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.709
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.730
BGIOSGA026461 Oryza indica BGIOSGA026461 I
BGIOSGA026464 Oryza indica BGIOSGA026464 I
Bo2g016490 Brassica oleracea Bo2g016490 I 0.678
Bo2g083920 Brassica oleracea Bo2g083920 I 0.696
Bo3g013160 Brassica oleracea Bo3g013160 I
Bo6g086320 Brassica oleracea Bo6g086320 I 0.694
Bo6g119660 Brassica oleracea Bo6g119660 I 0.694
Bo9g155940 Brassica oleracea Bo9g155940 I 0.698
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.698
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.694
Bra002159 Brassica rapa Bra002159 I 0.698
Bra003752 Brassica rapa Bra003752 I 0.694
Bra006460 Brassica rapa Bra006460 I
Bra008200 Brassica rapa Bra008200 I 0.696
Bra015840 Brassica rapa Bra015840 I 0.694
Bra023674 Brassica rapa Bra023674 I 0.678
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.693
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.694
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.693
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.694
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.680
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.697
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.696
Ca_10770 Cicer arietinum Ca_10770 I 0.702
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.697
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.739
Cla006713 Citrullus lanatus Cla006713 I 0.771
Cla021113 Citrullus lanatus Cla021113 I 0.705
Cla022803 Citrullus lanatus Cla022803 I
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.772
Cucsa.231820 Cucumis sativus Cucsa.231820 I
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.702
DREB2C Oryza sativa OS08G0565200 I
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.718
DREB2D Arabidopsis thaliana AT1G75490 D 0.694
DREB2G Arabidopsis thaliana AT5G18450 D 0.698
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.751
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.727
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.772
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.700
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.700
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.694
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.745
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.691
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.705
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.702
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.702
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.692
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.692
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.699
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.699
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.693
GRMZM2G028386 Zea mays GRMZM2G028386 I
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.681
GRMZM2G376255 Zea mays GRMZM2G376255 I
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.755
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.685
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.722
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.732
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.757
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.700
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.757
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.713
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.702
LPERR08G12790 Leersia perrieri LPERR08G12790 I
LPERR08G20650 Leersia perrieri LPERR08G20650 I
Lus10003581.g Linum usitatissimum Lus10003581.g I
Lus10006127.g Linum usitatissimum Lus10006127.g I
Lus10010632.g Linum usitatissimum Lus10010632.g I
Lus10011319.g Linum usitatissimum Lus10011319.g I
Lus10012210.g Linum usitatissimum Lus10012210.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.717
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.769
Lus10024298.g Linum usitatissimum Lus10024298.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.769
MDP0000141335 Malus domestica MDP0000141335 I 0.690
MDP0000153866 Malus domestica MDP0000153866 I 0.736
MDP0000250924 Malus domestica MDP0000250924 I 0.712
MDP0000250927 Malus domestica MDP0000250927 I 0.704
MDP0000295902 Malus domestica MDP0000295902 I 0.690
mgf007881m Mimulus guttatus mgf007881m I 0.718
mgf017629m Mimulus guttatus mgf017629m I 0.700
mgf024545m Mimulus guttatus mgf024545m I 0.696
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.702
MTR_3g112440 Medicago truncatula MTR_3g112440 I
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.730
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.743
OB08G30790 Oryza brachyantha OB08G30790 I
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I
OMERI08G18820 Oryza meridionalis OMERI08G18820 I
ONIVA09G01190 Oryza nivara ONIVA09G01190 I
OPUNC08G21890 Oryza punctata OPUNC08G21890 I
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.739
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.697
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.753
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.735
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.699
PK07402.1 Cannabis sativa PK07402.1 D 0.780
PK07829.1 Cannabis sativa PK07829.1 I 0.701
PK08602.1 Cannabis sativa PK08602.1 D
Pm003634 Prunus mume Pm003634 I 0.729
Pm006274 Prunus mume Pm006274 I 0.702
Pm015262 Prunus mume Pm015262 I 0.748
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.696
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.693
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.805
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.814
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.748
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.694
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.714
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.699
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.799
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.796
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.799
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.796
Sb07g023575 Sorghum bicolor Sb07g023575 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.698
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.710
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.710
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.699
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.735
TCM_026121 Theobroma cacao TCM_026121 I 0.679
TCM_034132 Theobroma cacao TCM_034132 I 0.693
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.698
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.767
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.694
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.765
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.707