Carubv10012703m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10012703m.g T181270_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.933 0.933
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.933 0.933
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012703m FAR1 65 153

Links

Other FAR1 family TFs
Other Capsella rubella TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I
DREB2C Arabidopsis lyrata scaffold_402826.1 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I
DREB2D Arabidopsis thaliana AT1G75490 D
DREB2G Arabidopsis thaliana AT5G18450 D
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I
Bo2g006960 Brassica oleracea Bo2g006960 I
Bo2g016490 Brassica oleracea Bo2g016490 I
Bo2g083920 Brassica oleracea Bo2g083920 I
Bo6g086320 Brassica oleracea Bo6g086320 I
Bo6g119660 Brassica oleracea Bo6g119660 I
Bo9g155940 Brassica oleracea Bo9g155940 I
Bo9g177130 Brassica oleracea Bo9g177130 I
Bra002159 Brassica rapa Bra002159 I
Bra003752 Brassica rapa Bra003752 I
Bra008200 Brassica rapa Bra008200 I
Bra015840 Brassica rapa Bra015840 I
Bra023674 Brassica rapa Bra023674 I
Bra028759 Brassica rapa Bra028759 I
PK07402.1 Cannabis sativa PK07402.1 D
PK07829.1 Cannabis sativa PK07829.1 I
PK08602.1 Cannabis sativa PK08602.1 D
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I
Carubv10002425m.g Capsella rubella Carubv10002425m.g I
Carubv10020960m.g Capsella rubella Carubv10020960m.g I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I
Ca_07264 Cicer arietinum Ca_07264 I
Ca_10770 Cicer arietinum Ca_10770 I
Ca_12446 Cicer arietinum Ca_12446 I
Cla006713 Citrullus lanatus Cla006713 I
Cla021113 Citrullus lanatus Cla021113 I
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I
Cucsa.136780 Cucumis sativus Cucsa.136780 I
Cucsa.342750 Cucumis sativus Cucsa.342750 I
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I
GLYMA02G31350 Glycine max GLYMA02G31350 I
GLYMA02G42960 Glycine max GLYMA02G42960 I
GLYMA03G29530 Glycine max GLYMA03G29530 I
GLYMA04G03070 Glycine max GLYMA04G03070 I
GLYMA06G03110 Glycine max GLYMA06G03110 I
GLYMA10G21850 Glycine max GLYMA10G21850 I
GLYMA14G06080 Glycine max GLYMA14G06080 I
GLYMA14G07620 Glycine max GLYMA14G07620 I
GLYMA14G32210 Glycine max GLYMA14G32210 I
GLYMA17G37350 Glycine max GLYMA17G37350 I
GLYMA19G32380 Glycine max GLYMA19G32380 I
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I
MLOC_66686 Hordeum vulgare MLOC_66686 I
LPERR01G03760 Leersia perrieri LPERR01G03760 I
LPERR03G04860 Leersia perrieri LPERR03G04860 I
Lus10003581.g Linum usitatissimum Lus10003581.g I
Lus10010632.g Linum usitatissimum Lus10010632.g I
Lus10011319.g Linum usitatissimum Lus10011319.g I
Lus10012210.g Linum usitatissimum Lus10012210.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I
MDP0000141335 Malus domestica MDP0000141335 I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000153866 Malus domestica MDP0000153866 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000250924 Malus domestica MDP0000250924 I
MDP0000250927 Malus domestica MDP0000250927 I
MDP0000290585 Malus domestica MDP0000290585 I
MDP0000295902 Malus domestica MDP0000295902 I
MDP0000446783 Malus domestica MDP0000446783 I
MDP0000703626 Malus domestica MDP0000703626 I
MDP0000871361 Malus domestica MDP0000871361 I
cassava15495.m1 Manihot esculenta cassava15495.m1 I
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I
cassava25887.m1 Manihot esculenta cassava25887.m1 I
cassava39243.m1 Manihot esculenta cassava39243.m1 I
cassava41240.m1 Manihot esculenta cassava41240.m1 I
cassava45031.m1 Manihot esculenta cassava45031.m1 I
MTR_1g023170 Medicago truncatula MTR_1g023170 I
MTR_5g083330 Medicago truncatula MTR_5g083330 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
MTR_7g092190 Medicago truncatula MTR_7g092190 I
mgf007881m Mimulus guttatus mgf007881m I
mgf017629m Mimulus guttatus mgf017629m I
mgf024545m Mimulus guttatus mgf024545m I
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
OBART01G04210 Oryza barthii OBART01G04210 I
OBART03G05550 Oryza barthii OBART03G05550 I
OB01G13930 Oryza brachyantha OB01G13930 I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
BGIOSGA011963 Oryza indica BGIOSGA011963 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
OMERI03G05220 Oryza meridionalis OMERI03G05220 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
ONIVA03G05350 Oryza nivara ONIVA03G05350 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
OPUNC03G05230 Oryza punctata OPUNC03G05230 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I
DREB2A Oryza sativa OS01G0165000 I
DREB2E Oryza sativa OS03G0174400 I
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I
Pavir.J37967 Panicum virgatum Pavir.J37967 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I
Pm003634 Prunus mume Pm003634 I
Pm006274 Prunus mume Pm006274 I
Pm015262 Prunus mume Pm015262 I
Pm025865 Prunus mume Pm025865 I
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I
27810.m000639 Ricinus communis 27810.m000639 I
29680.m001737 Ricinus communis 29680.m001737 I
29729.m002292 Ricinus communis 29729.m002292 I
30170.m014115 Ricinus communis 30170.m014115 I
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
Sb07g023575 Sorghum bicolor Sb07g023575 I
TCM_024756 Theobroma cacao TCM_024756 I
TCM_026121 Theobroma cacao TCM_026121 I
TCM_034132 Theobroma cacao TCM_034132 I
TCM_043275 Theobroma cacao TCM_043275 I
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I
TRIUR3_17973 Triticum urartu TRIUR3_17973 I
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I
GRMZM2G028386 Zea mays GRMZM2G028386 I
GRMZM2G156737 Zea mays GRMZM2G156737 I
GRMZM2G376255 Zea mays GRMZM2G376255 I
GRMZM2G399098 Zea mays GRMZM2G399098 I
GRMZM2G419901 Zea mays GRMZM2G419901 I