Pavir.Aa00929 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Aa00929 T023776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00929.1.p B3 78 183
Pavir.Aa00929.2.p B3 78 183

Links

Other B3 family TFs
Other Panicum virgatum TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G024948 Zea mays GRMZM2G024948 N 1.000
Sb04g031710 Sorghum bicolor Sb04g031710 N 1.000
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.931
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.931
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.931
OBART02G28100 Oryza barthii OBART02G28100 N 0.921
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.921
OS02G0683500 Oryza sativa OS02G0683500 N 0.921
OB02G35380 Oryza brachyantha OB02G35380 I 0.921
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.921
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.921
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.921
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.921
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.921
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.921
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.921
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.911
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.911
Si020241m.g Setaria italica Si020241m.g N 0.911
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.911
Si011823m.g Setaria italica Si011823m.g N 0.901
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.901
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.901
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.899
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.893
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.891
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.891
OBART04G22880 Oryza barthii OBART04G22880 I 0.891
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.891
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.891
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.891
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.891
OS04G0581400 Oryza sativa OS04G0581400 I 0.891
Si036864m.g Setaria italica Si036864m.g N 0.891
OS03G0120900 Oryza sativa OS03G0120900 N 0.881
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.881
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.881
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.881
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.881
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.881
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.881
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.881
OBART03G01650 Oryza barthii OBART03G01650 N 0.881
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.881
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.881
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.881
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.881
OB03G11610 Oryza brachyantha OB03G11610 N 0.871
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.871
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.863
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.861
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.851
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.842
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.842
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.842
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.832
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.832
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.822
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.822
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.822
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.822
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.822
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.822
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.822
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.822
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.822
Pm024248 Prunus mume Pm024248 I 0.812
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.812
30076.m004471 Ricinus communis 30076.m004471 I 0.812
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.812
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.812
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.812
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.812
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.812
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.812
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.812
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.812
TCM_005014 Theobroma cacao TCM_005014 I 0.812
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.812
Ca_01368 Cicer arietinum Ca_01368 I 0.812
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.812
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.812
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.802
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.802
PK11025.1 Cannabis sativa PK11025.1 I 0.802
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.802
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.802
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.802
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.802
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.802
TCM_015590 Theobroma cacao TCM_015590 I 0.802
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.802
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.802
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.802
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.802
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.802
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.802
Cla014858 Citrullus lanatus Cla014858 N 0.798
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.798
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.792
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.792
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.792
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.792
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.792
mgf023769m Mimulus guttatus mgf023769m N 0.792
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.792
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.792
Bra004501 Brassica rapa Bra004501 N 0.792
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.790
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.788
OS10G0537100 Oryza sativa OS10G0537100 N 0.782
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.782
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.782
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.782
Bo4g006900 Brassica oleracea Bo4g006900 N 0.782
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.782
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.782
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.782
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.782
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.782
OBART10G17010 Oryza barthii OBART10G17010 N 0.782
Bra040478 Brassica rapa Bra040478 I 0.782
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.782
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.782
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.776
PK21157.1 Cannabis sativa PK21157.1 I 0.772
Bo3g039420 Brassica oleracea Bo3g039420 N 0.772
30068.m002615 Ricinus communis 30068.m002615 I 0.772
Si039972m.g Setaria italica Si039972m.g N 0.772
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.772
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.772
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.772
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.772
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.772
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.772
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.762
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.762
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.762
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.762
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.762
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.762
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.762
Bra000434 Brassica rapa Bra000434 N 0.762
Bo4g197410 Brassica oleracea Bo4g197410 I 0.762
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.762
NGA1 Arabidopsis thaliana AT2G46870 N 0.762
Cla017937 Citrullus lanatus Cla017937 I 0.752
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.752
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.752
Cla006845 Citrullus lanatus Cla006845 I 0.752
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.743
Bo6g079210 Brassica oleracea Bo6g079210 N 0.743
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
Pm028725 Prunus mume Pm028725 N 0.743
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.743
Bra014415 Brassica rapa Bra014415 N 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.743
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.743
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.743
Cla005055 Citrullus lanatus Cla005055 N 0.733
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.733
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.733
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.733
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.733
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.733
NGA3 Arabidopsis thaliana AT1G01030 N 0.733
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.733
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.733
Bo5g002790 Brassica oleracea Bo5g002790 N 0.733
Bo4g099000 Brassica oleracea Bo4g099000 N 0.733
OB05G32250 Oryza brachyantha OB05G32250 I 0.733
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.733
F775_04153 Aegilops tauschii F775_04153 N 0.733
MDP0000138163 Malus domestica MDP0000138163 N 0.733
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.733
Bo8g097490 Brassica oleracea Bo8g097490 N 0.733
Bra007646 Brassica rapa Bra007646 N 0.733
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.733
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.733
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.732
OB10G24100 Oryza brachyantha OB10G24100 N 0.731
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.727
TCM_022729 Theobroma cacao TCM_022729 N 0.727
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.723
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.723
PK04952.1 Cannabis sativa PK04952.1 I 0.723
MLOC_47091 Hordeum vulgare MLOC_47091 N 0.723
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.723
NGA2 Arabidopsis thaliana AT3G61970 N 0.723
MDP0000288808 Malus domestica MDP0000288808 N 0.723
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.723
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.723
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.723
Bra003482 Brassica rapa Bra003482 N 0.723
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.723
Bra030497 Brassica rapa Bra030497 N 0.723
LPERR07G08550 Leersia perrieri LPERR07G08550 N 0.720
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.713
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.713
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.713
ARF31 Arabidopsis thaliana AT2G36080 N 0.713
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.713
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.713
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.713
Bo3g001110 Brassica oleracea Bo3g001110 N 0.713
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.713
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.713
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.713
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.713
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.713
Bra033294 Brassica rapa Bra033294 N 0.713
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.713
Bo9g176470 Brassica oleracea Bo9g176470 N 0.713
Ca_25633 Cicer arietinum Ca_25633 I 0.713
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.713
mgf019085m Mimulus guttatus mgf019085m N 0.713
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.713
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
ORUFI08G03850 Oryza rufipogon ORUFI08G03850 N 0.708
ONIVA08G03420 Oryza nivara ONIVA08G03420 N 0.708
OGLUM08G03520 Oryza glumaepatula OGLUM08G03520 N 0.708
OS08G0157700 Oryza sativa OS08G0157700 N 0.708
ORGLA08G0028800 Oryza glaberrima ORGLA08G0028800 N 0.708
BGIOSGA028020 Oryza indica BGIOSGA028020 N 0.708
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.704
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703
Bra034828 Brassica rapa Bra034828 N 0.703
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.703
Bra017262 Brassica rapa Bra017262 N 0.703
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.703
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.703
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.703
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.703
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.703
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bo4g035110 Brassica oleracea Bo4g035110 N 0.703
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.703
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.703
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.703
30032.m000462 Ricinus communis 30032.m000462 N 0.703
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.703
Bra005301 Brassica rapa Bra005301 N 0.703
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
MDP0000229742 Malus domestica MDP0000229742 N 0.703
mgf018965m Mimulus guttatus mgf018965m N 0.703
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703