Bo2g045930 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo2g045930 T000748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.857 0.980
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.829 0.900
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.829 0.900
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.829 0.900
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.788 0.800
ERF069
M01604_2.00 		Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN		 PBM
Weirauch et al.(2014)
pTH7550 		0.766 0.820
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.763 0.720
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.732 0.720
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.727 0.700
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.726 0.700
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.717 0.700
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.708 0.700
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.708 0.700
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.708 0.700
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.704 0.640
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.704 0.640
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.702 0.680
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.701 0.680
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.701 0.680
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.701 0.680
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.700 0.720
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.700 0.720
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.699 0.680
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.697 0.680
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.697 0.680
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.692 0.660
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.690 0.680
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.690 0.680
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.690 0.680
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.688 0.700
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.688 0.700
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.688 0.700
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.687 0.700
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.685 0.660
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.685 0.640
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.684 0.700
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.684 0.580
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.681 0.660
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.680 0.680
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.680 0.680
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.680 0.600
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.680 0.600
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.679 0.620
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.679 0.620
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.679 0.620
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.679 0.620
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.679 0.620
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g045930.1 AP2 118 169

Links

Other AP2 family TFs
Other Brassica oleracea TFs

1286 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01923 Aegilops tauschii F775_01923 I
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
TCP1 Arabidopsis thaliana AT1G67260 D
BRC2 Arabidopsis thaliana AT1G68800 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I
Bo2g055640 Brassica oleracea Bo2g055640 I
Bo2g061250 Brassica oleracea Bo2g061250 I
Bo6g099040 Brassica oleracea Bo6g099040 I
Bo6g103670 Brassica oleracea Bo6g103670 I
Bra004097 Brassica rapa Bra004097 I
Bra004212 Brassica rapa Bra004212 I
Bra034010 Brassica rapa Bra034010 I
Bra038350 Brassica rapa Bra038350 I
PK12240.1 Cannabis sativa PK12240.1 D
PK19717.1 Cannabis sativa PK19717.1 D
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
Carubv10020555m.g Capsella rubella Carubv10020555m.g I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
Cla002355 Citrullus lanatus Cla002355 I
Cla007227 Citrullus lanatus Cla007227 I
Cla016709 Citrullus lanatus Cla016709 I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I
Cucsa.031600 Cucumis sativus Cucsa.031600 I
Cucsa.238090 Cucumis sativus Cucsa.238090 I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Cucsa.283930 Cucumis sativus Cucsa.283930 I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
GLYMA05G07943 Glycine max GLYMA05G07943 I
GLYMA08G28691 Glycine max GLYMA08G28691 I
GLYMA10G39141 Glycine max GLYMA10G39141 I
GLYMA13G07475 Glycine max GLYMA13G07475 I
GLYMA17G13065 Glycine max GLYMA17G13065 I
GLYMA18G51581 Glycine max GLYMA18G51581 I
GLYMA19G05921 Glycine max GLYMA19G05921 I
GLYMA20G28670 Glycine max GLYMA20G28670 I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I
MLOC_4614 Hordeum vulgare MLOC_4614 I
MLOC_58142 Hordeum vulgare MLOC_58142 I
MLOC_70116 Hordeum vulgare MLOC_70116 I
LPERR03G25950 Leersia perrieri LPERR03G25950 I
LPERR08G12880 Leersia perrieri LPERR08G12880 I
LPERR09G06870 Leersia perrieri LPERR09G06870 I
Lus10003078.g Linum usitatissimum Lus10003078.g I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10034072.g Linum usitatissimum Lus10034072.g I
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
cassava10552.m1 Manihot esculenta cassava10552.m1 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
MTR_1g103380 Medicago truncatula MTR_1g103380 I
MTR_4g111935 Medicago truncatula MTR_4g111935 I
MTR_6g017055 Medicago truncatula MTR_6g017055 I
MTR_7g018500 Medicago truncatula MTR_7g018500 I
mgf019480m Mimulus guttatus mgf019480m I
mgf022233m Mimulus guttatus mgf022233m I
mgf026636m Mimulus guttatus mgf026636m I
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I
OBART03G31290 Oryza barthii OBART03G31290 I
OBART09G10040 Oryza barthii OBART09G10040 I
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
BGIOSGA030744 Oryza indica BGIOSGA030744 I
OMERI03G27910 Oryza meridionalis OMERI03G27910 I
OMERI09G07770 Oryza meridionalis OMERI09G07770 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
ONIVA08G16720 Oryza nivara ONIVA08G16720 I
ONIVA09G09540 Oryza nivara ONIVA09G09540 I
OPUNC03G28490 Oryza punctata OPUNC03G28490 I
OPUNC08G13710 Oryza punctata OPUNC08G13710 I
OPUNC09G08520 Oryza punctata OPUNC09G08520 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I
TB1 Oryza sativa OS03G0706500 D
OS09G0410500 Oryza sativa OS09G0410500 I
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I
Pm015499 Prunus mume Pm015499 I
Pm029002 Prunus mume Pm029002 I
Pm030202 Prunus mume Pm030202 I
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
29738.m001041 Ricinus communis 29738.m001041 I
30167.m000856 Ricinus communis 30167.m000856 I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
Si015230m.g Setaria italica Si015230m.g I
Si033183m.g Setaria italica Si033183m.g I
Si038692m.g Setaria italica Si038692m.g I
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I
Sb01g010690 Sorghum bicolor Sb01g010690 I
Sb02g024450 Sorghum bicolor Sb02g024450 I
Sb07g021140 Sorghum bicolor Sb07g021140 I
TCM_011874 Theobroma cacao TCM_011874 I
TCM_012252 Theobroma cacao TCM_012252 I
TCM_019518 Theobroma cacao TCM_019518 I
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I
TRIUR3_20728 Triticum urartu TRIUR3_20728 I
TRIUR3_31795 Triticum urartu TRIUR3_31795 I
BRC2 Vitis vinifera VIT_01s0011g02920 I
TCP1 Vitis vinifera VIT_14s0083g00150 I
AC233950.1_FG002 Zea mays AC233950.1_FG002 I
GRMZM2G031905 Zea mays GRMZM2G031905 I
GRMZM2G060319 Zea mays GRMZM2G060319 I
GRMZM2G062711 Zea mays GRMZM2G062711 I
GRMZM2G064628 Zea mays GRMZM2G064628 I
GRMZM2G110242 Zea mays GRMZM2G110242 I
GRMZM2G166687 Zea mays GRMZM2G166687 I